Hsar004517.1
Basic Information
- Insect
- Heliconius sara
- Gene Symbol
- -
- Assembly
- GCA_917862395.2
- Location
- OU860783.2:11349403-11361545[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0025 0.18 12.7 1.2 1 23 278 300 278 300 0.97 2 12 0.0045 0.33 11.9 0.9 2 23 308 329 307 329 0.94 3 12 0.021 1.5 9.8 0.3 1 23 333 355 333 355 0.97 4 12 0.0016 0.12 13.3 1.8 1 23 360 383 360 383 0.98 5 12 0.00095 0.071 14.0 0.2 1 23 387 410 387 410 0.95 6 12 0.041 3.1 8.9 0.1 3 20 430 447 429 453 0.92 7 12 0.00026 0.02 15.8 0.6 3 23 463 484 463 484 0.98 8 12 0.28 20 6.3 0.5 3 23 504 525 502 525 0.95 9 12 0.00011 0.0084 16.9 0.9 1 23 536 558 536 558 0.97 10 12 2.8e-05 0.0021 18.8 1.3 1 23 564 586 564 586 0.97 11 12 0.071 5.2 8.1 3.0 1 23 592 614 592 614 0.96 12 12 3.6e-05 0.0027 18.5 0.1 1 23 620 643 620 643 0.97
Sequence Information
- Coding Sequence
- ATGGAAGACAAATGTAAAGTGTGCAGAATATGTCTTGCGACGGATGTTAAAATGCACAATTTGCTTATTTATCCATTAGCTGTGTGCTATGAGATTTTAGTcggaaattatagtAAAATGGCTGATTTGCCAATATTTGTTTGCTATATATGTGCTGGGCAACtgaggaaaatttattattttagagagAAATGTCTTAAAGGACACAGTGCATTATGTGATTCGCTTCTGTCATAtagaaaaATAAACACCAGTGTTATAGGACAAGTAAATAAAGAGAATTTACAACTTTCATCAAATTTAAGTTGTATCAAATTGCCATCTGTAAATATAACTGACGACAATAATGaggaaatttataatgaattattaaaagagGAGCCCTATGATGATCATATGAATGATGATGTATTTTTTGatgatattgatattataaaagaagAATTGAATAATGATGTCTCTGTAGCTTCCAGTGATGATGAGCCTCTATCTTTACATCAGAAGAAGAAGAGAGgtagaaagaagaaaataaatgtaaatattgaaattgaatgtAATGATGCTCATAAAcCTCTCCTACCTGCTGATGCTGAAACTACAGAAGACACTAAAACCGTAACAAAACGCACACGCGGCAGACCAAGGAAGATCAGATCAAAGAGTATTGAAGCGACAGAGGTGCCGAAACGACGCCGCACCAACAACACCGGGGGAGTGCCCAACGATGAGATCGATATTGAGAGTTATTGCACTATTATTACTTTAACGGAAGAAcaacaaaaagaagaaatattacAGAGGAAAGAATCGTCAAATTATATAAACGCGATATACCAATGTAATATATGTTTCAAAGGATTCATAGACAACCGGGCTTGGGACCATCATGTCACTAAACATGATCCTaAAGCAGGCGACGTCGAATGTCCCATATGTAAATTccgttttaaaacaaaaaggatTCTACAAAAACACGCGTCTAACCATGAAAAGAAATTCGCCTGTAAAGCTTGTCCTTATGTTTCTAAAACTGCTACTCAAGCAAAACAGCACCAGCGTTGGCATAAAGGCGTTACGTACAAATGTCAGCATTGCGATGAAATTTTAACaAAATGGACGTCTTACTTGAGTCACGTTCGCATCAAGCACCCATCGGAGTTCATCTGTGATGTATGCGGGTACTCTTTTGTGAGCAAACTGGGCCTCAGTATGCACAAGAGCATGATGCATAaggagAATAAAACAGAAACAGACGACACTAAAGAAGATAGCAAAGAATCGCCATATTGTGCGCAATGCGATGTCAAATTTGTGTCAGTGGAAGCGTACAAGAGGCACATGGTGATGTCAGTCAAACATACTGACAATACTGACTTCAAtAACGGTTGTCGTGTATGCGGTGAAAAGTTCCCCGACGCGGAATCTCTGCGCTTGCACCATAGACGAGCCCACGCCAAGAAAAGGCCTAAAAATTATGGGAAGAAACCGACTTGCAATTTTCCTACTAATTGTGAACATtgTTCAGAAGAAATTCCAAACGCACGCGAGTATTGGAATCACTTTAGACGAGTCCATCCTGATAAGAGCTATCCGTTACCGAAGAACCACATATGTGATATATGCGGGAAAGGATTTAGAGGCAACGCGTTCCTGGTGTACCACAAGCGCACGCACTCGGCGGAGCGCGCGTTCGCGTGCGCGCAGTGCCCCAAGGCCTTCCACAACCGCACCAACCTGCAGATGCACGCGCGCACGCACTCCGAGCGGCGCCCGCACGCCTGCGCGCTCTGCGCCAAGGCCTTCAAGTGCAAGGGCGCGCTCAACCGGCACTTCCGGagcCACACCGGCGTTAAGCCCTACGCGTGTGAAGTATGCGGCAAAGCGTTCGCGCAATCCAACAGCAGGAAACTACACGTTAGGACGGTACACTTGAAACAGCCGTCCCCTTACATAAGCAAGTCGAGGCTGGAGAAGCGGAAGGCGCAGGCGCATAAGGATCTCAACGGCCAACAGTTTATGTATTAA
- Protein Sequence
- MEDKCKVCRICLATDVKMHNLLIYPLAVCYEILVGNYSKMADLPIFVCYICAGQLRKIYYFREKCLKGHSALCDSLLSYRKINTSVIGQVNKENLQLSSNLSCIKLPSVNITDDNNEEIYNELLKEEPYDDHMNDDVFFDDIDIIKEELNNDVSVASSDDEPLSLHQKKKRGRKKKINVNIEIECNDAHKPLLPADAETTEDTKTVTKRTRGRPRKIRSKSIEATEVPKRRRTNNTGGVPNDEIDIESYCTIITLTEEQQKEEILQRKESSNYINAIYQCNICFKGFIDNRAWDHHVTKHDPKAGDVECPICKFRFKTKRILQKHASNHEKKFACKACPYVSKTATQAKQHQRWHKGVTYKCQHCDEILTKWTSYLSHVRIKHPSEFICDVCGYSFVSKLGLSMHKSMMHKENKTETDDTKEDSKESPYCAQCDVKFVSVEAYKRHMVMSVKHTDNTDFNNGCRVCGEKFPDAESLRLHHRRAHAKKRPKNYGKKPTCNFPTNCEHCSEEIPNAREYWNHFRRVHPDKSYPLPKNHICDICGKGFRGNAFLVYHKRTHSAERAFACAQCPKAFHNRTNLQMHARTHSERRPHACALCAKAFKCKGALNRHFRSHTGVKPYACEVCGKAFAQSNSRKLHVRTVHLKQPSPYISKSRLEKRKAQAHKDLNGQQFMY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00781248;
- 90% Identity
- iTF_00774721; iTF_00780485; iTF_00782060; iTF_00778285; iTF_00775526; iTF_00775527; iTF_00777515; iTF_00779743; iTF_00781248;
- 80% Identity
- -