Hsar016777.1
Basic Information
- Insect
- Heliconius sara
- Gene Symbol
- -
- Assembly
- GCA_917862395.2
- Location
- OU860796.2:17997724-18004246[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0091 0.68 10.9 1.6 1 23 134 156 134 156 0.96 2 15 0.19 14 6.8 0.1 3 23 186 207 186 207 0.94 3 15 7.5 5.6e+02 1.8 0.1 2 12 228 238 227 241 0.86 4 15 0.0011 0.082 13.8 1.0 1 23 244 267 244 267 0.94 5 15 0.22 16 6.6 0.3 2 23 270 292 269 292 0.95 6 15 0.0021 0.16 12.9 1.2 2 22 299 319 298 319 0.95 7 15 0.0046 0.34 11.9 0.6 1 23 377 400 377 400 0.90 8 15 0.36 27 5.9 0.1 3 23 429 450 427 450 0.92 9 15 0.19 14 6.8 0.3 3 23 474 496 472 496 0.94 10 15 0.00041 0.03 15.2 0.6 3 20 503 520 501 524 0.90 11 15 0.0065 0.48 11.4 0.4 1 23 529 552 529 552 0.97 12 15 0.00027 0.02 15.7 0.2 2 23 558 580 558 580 0.94 13 15 3e-05 0.0022 18.7 4.7 1 23 584 607 584 607 0.97 14 15 0.00013 0.0096 16.7 0.6 2 23 614 635 613 635 0.96 15 15 0.00088 0.065 14.1 2.1 1 23 641 663 641 663 0.97
Sequence Information
- Coding Sequence
- ATGCTCGGCAGAGGGGAATTCAAGTCAAAAGTGAAAGCATATCAAGATCAAATGAAAGCTGAGGAGGGTCAATCTGGTATGGTCACGGAAGTAGAATTTCTTGAGGATGATATTGATTATGatgaTGGGCCAGGCAATGACATAACGGAACCAAGTATATCCGAAGATATAACTGTAGAGACTTTACCCATTAAAAGCAAAAAAGGAAGACCCCGTAAAAATGCAGTCAAAccagaaaagaaaaaaactaaaattgaaGACAAACCTAAGGCTAAAATTGTGAGAGATATAAAACCTCGGAAACTAAAAGGCAGCGAATCATCATCGATGCGTAGAAGGAAAAACCTTCAATTGCTCTTCAACAATACGACGGTTATACCGTTTAAATGGAGAGGCAAATATCTTTGCTTCTATTGCAGTAAAGATATTTCAGTATATTCGGAACTTAGAAAACATACTAAGTCCCACGGCAATTGTTCTACCAAAGATCATTCGTTGAAAGTTCTCAAAGGTGGACAGAACATGGAAATTAAAATCGATATATCAAAGCTTGGCTGCGAAATTTGTAATGAAGAATTTACGGTTTTCGATGATATTTTGACTCATTTGCTTCTTAAGCATAAATTAGAGTTCGATAGAGAAGTGGATATGGCTATAGAAGAGTATAGGCTGGTGGACTTAAGTTGTTTGCTTTGTGATgaaaaatttacgtattttgGAGAGGGTGGTTATAGATGTGAGATTTGTCCACAGACCTTTAGTTCTCTTAATATACTGCGGAAACATAGAAGTAACAGACATCTTACTAGATGTGGCATTTGCCATCTACGGCTACCTTCTGCGGTATTGAAACAAAAACACATGGAAATAGAACATCCTGATGATGGTTCGCTCCAGTGTGAAATATGTTACAAAGATTTTCACACAAAACAAGGCCTTAAAATGCATTTACGTAAATGCAAAGGTGATATTTTCAACATAGCAATTAAGAAAGAAGAGTGCGAAGTAATGGACCTCGATTGTAACTATGAAGGCGTGAAAAGACCAAGTGTCAAACAAATTCGTGAAAATATTGTCATAGTTATAAATATGTCCACAGCGAtaccatttaatttttacaaaaacaaatttaattgctTTTACTGTTCCAAGGATTTCCCAGATTCGGATTCAATGAGAGAACATACAGTTTTAGAACATCCTATTTGTGATGTAAAggaaaaatgtatcaaaaaatGTCGAGAATCCGTCGCCTGTGTTAAAATCGATATTTCATCACTAGCATGCAAAATTTGTTTTGAATCGATGACTGATCTCGATACTCTTTTGGACCATCTCATATTAAAACACAATGCGAGTTATGATAAATCAATAACAACTTGTTTACAACCGTACAAACTAATCAAAGATCACATGGCGTGTCCAAATTGCCCTActgaaatatttcgtttctttggaacgttattaaaacatatgaataataagcatactaataataatattatctgtGTATATTGCGGTCAGACGTTCAGAAGAGATCAAAACTTACGTGTTCATATATGGAGACATCATAGAGACGGcagatttaaatgtaatatatgtgGAGCAGAATGTAATATACCGTCGAGGTTGTATATGCACATGGCGAAAGCTCATGGTGTCAAGGCAGCTAAGTGTCCTAAGTGTCCGGAAAGCTTCGCCACGCAGTATCTAAGACAGAAGCATTTGATCGAAGCACACGACTCAGGCCACAAATGTTCTTACTGTGGCAAACTATTTACTAGAAACTCCTTTATGCGAGATCATATAAGACGAACGCATCTGAAGGAGAAGAATGTGGAATGTTCTATTTGTAATATGAAGTTCTTTAATAACATTCTGTTAAGGAGACATATGGTTAAACATAGTGGCGAGAAGAATTTTCACTGTGACATTTGTGGTGAAAGATTTTATTGGCGGAAAAGTTTGCGTACGCATATGGCGCGGCATAATAAACTAATCAATGCTATATAA
- Protein Sequence
- MLGRGEFKSKVKAYQDQMKAEEGQSGMVTEVEFLEDDIDYDDGPGNDITEPSISEDITVETLPIKSKKGRPRKNAVKPEKKKTKIEDKPKAKIVRDIKPRKLKGSESSSMRRRKNLQLLFNNTTVIPFKWRGKYLCFYCSKDISVYSELRKHTKSHGNCSTKDHSLKVLKGGQNMEIKIDISKLGCEICNEEFTVFDDILTHLLLKHKLEFDREVDMAIEEYRLVDLSCLLCDEKFTYFGEGGYRCEICPQTFSSLNILRKHRSNRHLTRCGICHLRLPSAVLKQKHMEIEHPDDGSLQCEICYKDFHTKQGLKMHLRKCKGDIFNIAIKKEECEVMDLDCNYEGVKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMREHTVLEHPICDVKEKCIKKCRESVACVKIDISSLACKICFESMTDLDTLLDHLILKHNASYDKSITTCLQPYKLIKDHMACPNCPTEIFRFFGTLLKHMNNKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKAHGVKAAKCPKCPESFATQYLRQKHLIEAHDSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDICGERFYWRKSLRTHMARHNKLINAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00621427;
- 90% Identity
- iTF_00775508; iTF_00621427;
- 80% Identity
- -