Hsar010391.1
Basic Information
- Insect
- Heliconius sara
- Gene Symbol
- -
- Assembly
- GCA_917862395.2
- Location
- OU860790.2:2504001-2508903[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00016 0.012 16.5 0.7 1 23 132 154 132 154 0.97 2 18 0.0008 0.059 14.3 0.6 2 20 182 200 181 202 0.92 3 18 1.5e-05 0.0011 19.7 0.2 3 23 229 250 227 250 0.96 4 18 1.4 1.1e+02 4.0 0.4 2 12 271 281 270 283 0.86 5 18 0.0052 0.38 11.7 1.4 1 23 301 323 301 323 0.97 6 18 0.00091 0.067 14.1 0.3 1 23 341 363 341 363 0.96 7 18 0.00019 0.014 16.2 3.0 2 23 403 424 402 424 0.96 8 18 0.00059 0.044 14.7 4.2 2 23 467 489 467 489 0.97 9 18 0.0015 0.11 13.4 1.1 1 23 539 562 539 562 0.94 10 18 0.0012 0.092 13.7 0.3 1 23 614 636 614 636 0.97 11 18 0.0056 0.42 11.6 5.7 2 23 648 669 647 669 0.97 12 18 0.021 1.6 9.8 1.7 2 23 681 702 680 702 0.96 13 18 0.0012 0.086 13.8 0.7 1 23 712 734 712 734 0.98 14 18 0.0028 0.2 12.6 8.5 1 23 763 785 763 785 0.96 15 18 0.00052 0.039 14.8 2.5 1 23 796 818 796 818 0.96 16 18 7.6e-05 0.0056 17.5 1.3 1 23 826 848 826 848 0.97 17 18 0.0021 0.15 13.0 0.1 2 23 868 890 867 890 0.97 18 18 5.4 4e+02 2.2 0.2 1 10 908 917 908 930 0.88
Sequence Information
- Coding Sequence
- ATGGCTCTCAAACTTGGAAAGTGTAggctttgcctcaaactcggcGACTTTTATTCCATCTTCACGGTGGACAACAACTTACAGCTCGCTGAAATGGTTATGGAATGTGCCCGAGTAAAGatatgtGAAGGTGATGGACTTCCAGATAAAATTTGTAGTGAATGTATCCAGAAACTCAGCAGTGCCCATATATTTAAACAGCAATGTGAACGATCTGATCAAGAACTGAGGCGAAACTATATTCCGCCTCCAGgcTTTACTGCATCTACTCCTACTAGACAAAGTAGTGAAGAACAATCAAAACCCTATCCATCTTTCGAGGATTCTGAATTTGAAGACCAGAACAGTGGATCTGTATATTCAGGAGGAACTGATTCTGATGAGCCATTACTGCATAAGTGTGATGAATGTGGGAAAGCATTCAAATCTGCCCTTAGTGTGGTTGCTCACAAAAAGAGTCACAGACGAAGAAATGCCCAAAAACCTGTCCTAGTAGAACAACCCAAGGAGATCCAAGATGCTAATGACTCTGAGGATAAACTTAGCTGTGACAAATGTGGAAAAGAGTTTAAATTGAAGATAATGCTTAAACGCCACCACGAGATTTGTCCGAAATCGCCCAGAAAAGAGCTTATGGTGTCGTTAGAACCGATTGACGCTGTCCAACAGTCTATCAAAATAGATTGCCCAATGTGCTCGACGAAATTTAAGACAATTGAAAATTTGGAAAAACACATGAAGGTAGTTCACGCGGCAGTTCTTAAAAAGGAAGATACGTCCATTAAGAACGAAAATGGAAAAGTTTGCGTTCCATGCTTCTATTGCGGGGAGTCTTTCGAAGATTATTATATTCACAGTGCTCATTTCAACGTTTGTCCCCAAAAAACAGACACCATCACCTTCGAGTGTCCAGTTTGTAATAAAGTGATAACTAAAAAAGGTTGTTACTTCTTGCATTTGAAGGCACATTTTTTTCCGGTTAGCTCGAGTAAAACGACTCCGGAGCCtgtgaaaaataattttcaatgtcGCATGTGTAACAAGAAACTGCCGAGTCAAGATACTTTAATCACACATCTAGCGGCTCATATGTCCAATATGGATGAAGCGGATGACGGCGGTGATGAAGAATCCAGAGCAAGTACAATGGAGGATTCGGCATCAATACATTCAGAATACAGTGCTAACATATCGAGTGGACcacttaaatgtaaattttgtgaCAAATCCTTTAAATACAGAAAATCTCTATTGACCCATGAAATAAAACACAcagaggaaaatattaaaaaggaagTGCCAGACACTTCCACGGATCTGCTTCACGAAACCACAGCTAATGATAGATATAACAATTACGATTCTGATTCTAGTCAAGATGACGGCGAGGATGACAATACATGTGATATATGTGAGAAGCAGTTTTCCTACAAACGGTTGCTTTTGCATCATAAACGTACAAAACACAACATGACGTCTGGTACAAAAAGAGCCAAAATTAATCTAAAAGATTGTTCTGTACGCTGTCTCATATGCGACATAGAAATGAAAGTGAGCGCCATCAACGAACATAACCAGACGCATATAAGTGTGAATATAAAGCCGAGGAATCAATACACATGTATAGAATGTGGTCAGCAGTTCAAGAGTTGTAGTGCATTAGCcaatcatataaaatttgtgCATCGTTTAAAACAACCGCCTATAACGGTTGCGTCCGATTTGGCGGATTTTTGTGAAGTCGTTGTGACGAAGGCGGAACCCCTGGACGTTGTCCAGAGTCACAACGGCTTAGAGGATTCCGCCGGTAATGGCACTCCCTTGGTCAATCTGAGTGGTTTTACTTGCACTATATGCAGTAAACAGTTGCCGACGCTAATATCGTTGAAGCGACATGTCAATTGGCACAACCATGTTGGCAAAAGTATGGAGAAAAAGCTGCAGTGTTTTGTTTGTCAAGAGAACTTCAGGTTTCAGTGTCACTACAAGGCGCACATGCGTGAACACTACAACGATACAAACCTCGATCCCAAATATTTGACTTGCTCGATCTGTAACAGGAAGAGCAAGCACCTGCGCGCCGCCCAGGCTCATATGAACTACCACAAGCAAACACGATTCCAGAACAAGGACTATGAGTGTTCCATATGCAAGAAGGTGTTCCAGTACAGAAAAGTCTACCTTTCCCACATGGCTATCCATTATAAACGAGGCGAGAGTATCAACAATACTATAGTTGGCTCCGAACTGCCTAATTCAGTGGACAAAGATAAATTTGACGGAACCCATACTTGTCACCATTGTGGGAAAGTATGTGATTCAGAAAACTCATTAAAGCATCACATAATTTGGCATAATTCCAAAACTTCGCTGTACGGTGCGAGGCATGCGTGTGATATTTGCAATTTGCAGTTCACTAACAAAAGGAGGTTGGAACTACACACTCGGACGCATTTTGAAGATGATAATGGACCTTTTAAATGTCATATATGTGGAAAAGGTTACATTGTGGAAGATTACTTTAGAAGACACGTGAAAGGGCACAATTTTGATCATCAATCACATAAAAAGAGGATAGAGAAGTTAAGGaagaataaagtaaaatgtCCGATTTGTGCGCGCTTTTATCCAGACGTGGTAAAGCTTATTCGCCATTTGCGTCGGACTCATCCTGAAAGTAAAATGATTAAAGAGGATCCGGACGCGCCGGCGCCTCGATATTACTCCTGCAAATTGTGCGCGAAAGTATTCTTAGATGAAAAAAGATTGCAGTTCCATGAAGAAGCTCATCTGAGGAAAGCCAGAATTCTTCAAATGCAAATTCTGTGGGAAGAAGACCATCTCCCTCAAAAACCATAG
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNNLQLAEMVMECARVKICEGDGLPDKICSECIQKLSSAHIFKQQCERSDQELRRNYIPPPGFTASTPTRQSSEEQSKPYPSFEDSEFEDQNSGSVYSGGTDSDEPLLHKCDECGKAFKSALSVVAHKKSHRRRNAQKPVLVEQPKEIQDANDSEDKLSCDKCGKEFKLKIMLKRHHEICPKSPRKELMVSLEPIDAVQQSIKIDCPMCSTKFKTIENLEKHMKVVHAAVLKKEDTSIKNENGKVCVPCFYCGESFEDYYIHSAHFNVCPQKTDTITFECPVCNKVITKKGCYFLHLKAHFFPVSSSKTTPEPVKNNFQCRMCNKKLPSQDTLITHLAAHMSNMDEADDGGDEESRASTMEDSASIHSEYSANISSGPLKCKFCDKSFKYRKSLLTHEIKHTEENIKKEVPDTSTDLLHETTANDRYNNYDSDSSQDDGEDDNTCDICEKQFSYKRLLLHHKRTKHNMTSGTKRAKINLKDCSVRCLICDIEMKVSAINEHNQTHISVNIKPRNQYTCIECGQQFKSCSALANHIKFVHRLKQPPITVASDLADFCEVVVTKAEPLDVVQSHNGLEDSAGNGTPLVNLSGFTCTICSKQLPTLISLKRHVNWHNHVGKSMEKKLQCFVCQENFRFQCHYKAHMREHYNDTNLDPKYLTCSICNRKSKHLRAAQAHMNYHKQTRFQNKDYECSICKKVFQYRKVYLSHMAIHYKRGESINNTIVGSELPNSVDKDKFDGTHTCHHCGKVCDSENSLKHHIIWHNSKTSLYGARHACDICNLQFTNKRRLELHTRTHFEDDNGPFKCHICGKGYIVEDYFRRHVKGHNFDHQSHKKRIEKLRKNKVKCPICARFYPDVVKLIRHLRRTHPESKMIKEDPDAPAPRYYSCKLCAKVFLDEKRLQFHEEAHLRKARILQMQILWEEDHLPQKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -