Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 4.2e-05 0.085 13.3 1.0 12 39 221 245 212 252 0.83

2 4 0.064 1.3e+02 3.1 0.9 19 29 256 266 250 274 0.81

3 4 6.1e-05 0.12 12.8 2.7 3 41 269 303 267 305 0.86

4 4 0.016 33 5.0 0.1 19 43 312 333 308 334 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	4.2e-05	0.085	13.3	1.0	12	39	221	245	212	252	0.83
2	4	0.064	1.3e+02	3.1	0.9	19	29	256	266	250	274	0.81
3	4	6.1e-05	0.12	12.8	2.7	3	41	269	303	267	305	0.86
4	4	0.016	33	5.0	0.1	19	43	312	333	308	334	0.78

Coding Sequence: ATGTCTCGTCACGTGCTCTTGTCACGTCTTGCTGAGCATTTTCAAGCAGCATCGCCGCCGGGACAACGGTTCCCATCTCCTGAAAGAAGTGTCTCTCCTCGTTCACCGATCTCCGCCAGCTCGCCCCCGCAGTCTCCCGACTCTGTGACGCATCAGCGCCTCGATATGATACAACTTGGAGATATTGAGATCGCCGGAAGAGCACTTAAGCAGTACGCCAGAGCTACAGaaTTGGGAGCATTGATGTACTGCAGTGGACTAGGCGCGCTCTACAGCGGTGGCGTGTGGCCTCTGCTGCTTCCACATACACCTCCTTTCGCCTCTGGTATGGATCATGCCAGGCATACGCCACCAAGAGATGATGATGAAGAAGAGCTACCCTTAAATTTATCAACAAAAAACCGTCAAATTTGGTCACCGGGCAGCGCCTGTGAACGTGAACAAGTCGAGATGGAATCAGAACCACAGTCTCAATGGATCCAAGAAGATACTGACAGTCCTTTAGAGCTAGTCAAAAAGTGTCGAAGCAGCCCAGACGATGAGCGTCCGTCAAGTGCAGAAACTAGACATTGTCCCTCTGCCCCCGCCTACCACGCCTACCAGCAACCACCTCCACCACCAACAGACATCAACTTTTCCTTGCTCGTGAAGAATGAAAACAAAAACGAGAAATCTTTTCAgTGCAAGCAGTGCGGGAAAAGCTTCAAACGGTCGAGCACATTGTCCACGCACCTGCTAATCCACTCCGATACGAGGCCCTACCCGTGTCAGTACTGCGGCAAACGCTTCCATCAGAAATCTGATATGAAGAAGCATACCTACATTCATACTGGTGAGAAACCTCACAAGTGCGTGGTGTGCTCCAAAGCTTTCAGCCAAAGCTCGAATCTTATTACACACATGCGCAAGCACACTGGCTACAAACCTTTTTCCTGCGGTCTTTGCGAAAAAGCCTTCCAACGCAAGGTTGACCTACGCCGCCACAGAGAGTCACAACACGCTGAAATCGAACCGCCCAACGTCAATCCCCAAGGGTATAGATACTATGGTGACGACCAAACATCACTTACACCGCTGATTtctaaatag
Protein Sequence: MSRHVLLSRLAEHFQAASPPGQRFPSPERSVSPRSPISASSPPQSPDSVTHQRLDMIQLGDIEIAGRALKQYARATELGALMYCSGLGALYSGGVWPLLLPHTPPFASGMDHARHTPPRDDDEEELPLNLSTKNRQIWSPGSACEREQVEMESEPQSQWIQEDTDSPLELVKKCRSSPDDERPSSAETRHCPSAPAYHAYQQPPPPPTDINFSLLVKNENKNEKSFQCKQCGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCSKAFSQSSNLITHMRKHTGYKPFSCGLCEKAFQRKVDLRRHRESQHAEIEPPNVNPQGYRYYGDDQTSLTPLISK

Sequence clustering based on sequence similarity using MMseqs2