Hsar013733.1
Basic Information
- Insect
- Heliconius sara
- Gene Symbol
- -
- Assembly
- GCA_917862395.2
- Location
- OU860793.1:4083229-4083925[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2e-08 6e-05 23.1 0.0 1 42 19 60 19 62 0.92 2 2 0.39 3.8e+02 1.3 0.0 11 22 113 126 111 128 0.76
Sequence Information
- Coding Sequence
- ATGCCTCGCAAGTATAAACGAAAGCCAGGCGTGGTGCCGCGCCACATCAACTGGACTGAAGATAGCTTAGCACTTGCGTTCGaacatctaaataaaaaacacaaaagtatCAACGAAATATCCCGAATTTATGGCATATCGTCTCGAACCTTAAGAAGGCGGTTTGAACAGAGAAATAAGCTACTGGTGACACAAGGAAAATACCCTGTCCTTGTCTTCGAAAATGAAAAAAGACTAGTATCTCATATACTAAAATATGGAGACGCAGGATTTCCTCCTGAAAGGAGTCTAATTCGCCAATTAGCCTATCAGTTTGCCGAAAAACTAGGATTGAAGCACGTCGTGAGGCAAGCTGAGGGCTTGTCAATTCAAAGAGCGAAGGGTCTAAGCAGGGCCGAAGTAGCCAAATTTTTTGATCTTCTCATAACCGTCTTAACTGAAAATGATTTGCTGGATAAGCCAGAGAGAATTTTCCATATGGATGAAAGCGGTGTCCAACTCAACAATAAACCTGGCaatgttataaatgttataaattcaaaaacatCTAAAGGAAAAGCAACTAAAGGGCTACCaatcaaaggaaaaaaaaaacaaaacatctaTTAG
- Protein Sequence
- MPRKYKRKPGVVPRHINWTEDSLALAFEHLNKKHKSINEISRIYGISSRTLRRRFEQRNKLLVTQGKYPVLVFENEKRLVSHILKYGDAGFPPERSLIRQLAYQFAEKLGLKHVVRQAEGLSIQRAKGLSRAEVAKFFDLLITVLTENDLLDKPERIFHMDESGVQLNNKPGNVINVINSKTSKGKATKGLPIKGKKKQNIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -