Hnum007685.1
Basic Information
- Insect
- Heliconius numata
- Gene Symbol
- -
- Assembly
- GCA_016802625.1
- Location
- JAEBDU010013480.1:257933-264477[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.11 11 7.4 0.1 2 23 205 226 204 226 0.96 2 12 4.5e-06 0.00046 21.2 4.1 1 23 232 254 232 255 0.95 3 12 4.9 5e+02 2.2 3.3 1 23 270 292 270 292 0.89 4 12 0.0027 0.27 12.5 3.8 1 23 530 552 530 552 0.98 5 12 0.0025 0.26 12.6 4.1 2 23 558 580 557 580 0.96 6 12 0.0037 0.37 12.0 3.2 3 21 590 608 589 610 0.94 7 12 0.02 2 9.7 4.3 2 23 614 635 613 635 0.97 8 12 0.00032 0.032 15.4 0.7 2 23 649 671 648 671 0.96 9 12 0.00067 0.068 14.4 4.5 1 23 677 699 677 699 0.97 10 12 0.57 57 5.2 2.7 2 23 706 727 706 727 0.97 11 12 0.00079 0.079 14.2 3.0 1 23 733 756 733 756 0.97 12 12 0.041 4.1 8.8 2.7 1 23 760 783 760 783 0.96
Sequence Information
- Coding Sequence
- ATGGAGCAAAATTTCATCAAGCGCAAGGGGTTACGTACCTATACAAAATCTTCGCAAAAGGCTAATAATACGCTTTTGGACGAAGGCAAAAGCATAAAACCGTCTGCTAAGGTTCCTTTAAGCACAAAAGATGCGATAAAATATCTTTTAGAAGGATCTTTGAGGTTACGAGTATGCAGATACTGCTTAGGCGTTACTAGTGAGCTATCAGAACTAGATGAAATCCTTGTAATAGGAATTCATGGTTCAACCCACGAGGTAACTATAAGAGACATGGTTGCCAGCTTTCATCCTTATAAGGTTAATGAAGATACAAATTTCCCTAATAAAATATGTACTGATTGTGTTAACCATTCAATAAATTGCTATTTATTTGCTCAAAAATGTGAGCAATCTGAGCGAGCATTGCGTAACTGTTTTGATGATATGTATGAGAAAATAGATAAGCTGGACTCATTGGAACCCATAAAAAAAAGAGGCAAAAGAAAACGAAACCCCAATTACAATAGATTATATACAGAGCATAACAATGTAATAAATTATGCTGAACCCATAATAAATATTGTTAACATAGACAACTTTCCTATACCAAGTAATGAAATTAGTGAACTAGAATGTCAAAAGTGTTGGCAAGTTCTACCAAATATGGAGTCTTTGGTCAATCATGAGATGTCTCACCCTAAAACTATGTGGTATAATTGTAAATTGTGCGGCAAATCGTTTATAAAACGGTATCTTTTGAAAAGACATTTAAAAGAACATCATTTACATGCTAATGAAGATAATATACAAGTAAATATGGAAAATTTTAAATGTAACAAATGTGGTTGTTTAAGTATTACATTAGGAGACCATTTACAACATATGGAGAAACATAAATTCAAAGTTATGTTGAAAGGATTGATGGAACGTAAGGTTGATGATTTGTGTTCCATTTGCTTGGAGAAAGGGTCTAGGTTATCTAATTTGGGTGACATTATCAGTCTATATGGTGGATACCCAGGCTTAATTGGAGATAGATCTATCCACAATATTGTAAATGCTACAATACCAGAAATGACCTTTGATAGCTACATTGGGACAAAAATTTGCGATATATGTTTAAATAACGTAATCGCCGCGTACGTTTTCATATTTAAAATAAAACACGTCAGAAATAGATTAGGAATGTGTATTAGTTCTACATTAGATAATTTGAAAAGTGTTGACTTAGATAAAAATCTTATGGTGGAAATTTCCAAACAAACTATTTTACCTTATTTTAAAATTGACACTTTTGATGATCTTTTGATAGATAATATAGATGATAAATATAATGTTGAAGTGTTAGAAGACGAATTTAGGGAAAAATCTGATTCAGATAGTGATTTTGGTAGTGATAGTATAGATAGCAGTGTAAACGCGAGCCTAACGGACGATAACGAGAGTGTTATTGAGAATCCAGCTAGAAACGTTTCAAAGACTTATATGAGTAAAAAATTAGTTAACGGTTACCAATCCAAGTATGAGGATTCAGTCATTGATGACATTTGTAGTGAATTTTTAACGTTTAAAAAGAAAAAGCCTGTGAAACGCGCTCCCTGTTGGTATACATGTCCGTTTTGCAATAAACATTTTATTTCTGACTATTTCATAAAGAAACACATTTTGAAACATGTCCTGGCGAAAGTGCAATGCGATAAATGTCTGAAACAATTTAAATCTAAATTCCATCTTTTTGAACATAAAAAAATGGTTCACGTTTTGAAAAATGAGAGCTTCGTAGCGTGTAATATTTGTAGCAGAACTTTCTCGAAGGCGTACAAATTAAAAACACACGTGAAGTGTCATAAAATAAAAGAGTGTCACTTGTGTGATAAAGTGTATTTATCACAAAAACACTTCGATGTTCATATGCAGAGACATGCGATCAAATTCAGTGTATATAAAAATAAAGATACGCAAACGTGCAGCTTCTGTGAAAAATCTTTTTCAAACGAAAACGAACTTTCTTTACACGTAAATAAGATACACTTACAAATAAAACCATACAATTGTGATATGTGTGATAGGCAGTTCTACACCGAATATAACCTGTGCAGTCACAAAAAATTGCATAGTCTGCATTCTAAAGAAGTTTGCGAGTTTTGTAATAAAAACTTGAAGTGTAGGAAAGATTTGGTCGTGCATGTTAGAAAGCATATAGGCTCTAAACCACACCAATGTCCAGTGTGCAGGCAATCGTTTTATTCTGATACTAAAATGAAAAAACATATGAAAATTTTACACGGCGGCATATTTTGCTGTAGATTGTGTAAAACAGTTGTTTCTAGTCATCTAGACTTAAAAAATCATATAAATGTGGTGCATAGCTCTATGTAG
- Protein Sequence
- MEQNFIKRKGLRTYTKSSQKANNTLLDEGKSIKPSAKVPLSTKDAIKYLLEGSLRLRVCRYCLGVTSELSELDEILVIGIHGSTHEVTIRDMVASFHPYKVNEDTNFPNKICTDCVNHSINCYLFAQKCEQSERALRNCFDDMYEKIDKLDSLEPIKKRGKRKRNPNYNRLYTEHNNVINYAEPIINIVNIDNFPIPSNEISELECQKCWQVLPNMESLVNHEMSHPKTMWYNCKLCGKSFIKRYLLKRHLKEHHLHANEDNIQVNMENFKCNKCGCLSITLGDHLQHMEKHKFKVMLKGLMERKVDDLCSICLEKGSRLSNLGDIISLYGGYPGLIGDRSIHNIVNATIPEMTFDSYIGTKICDICLNNVIAAYVFIFKIKHVRNRLGMCISSTLDNLKSVDLDKNLMVEISKQTILPYFKIDTFDDLLIDNIDDKYNVEVLEDEFREKSDSDSDFGSDSIDSSVNASLTDDNESVIENPARNVSKTYMSKKLVNGYQSKYEDSVIDDICSEFLTFKKKKPVKRAPCWYTCPFCNKHFISDYFIKKHILKHVLAKVQCDKCLKQFKSKFHLFEHKKMVHVLKNESFVACNICSRTFSKAYKLKTHVKCHKIKECHLCDKVYLSQKHFDVHMQRHAIKFSVYKNKDTQTCSFCEKSFSNENELSLHVNKIHLQIKPYNCDMCDRQFYTEYNLCSHKKLHSLHSKEVCEFCNKNLKCRKDLVVHVRKHIGSKPHQCPVCRQSFYSDTKMKKHMKILHGGIFCCRLCKTVVSSHLDLKNHINVVHSSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -