Hnum028610.1
Basic Information
- Insect
- Heliconius numata
- Gene Symbol
- -
- Assembly
- GCA_016802625.1
- Location
- JAEBDU010000038.1:574174-577935[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00046 0.046 14.9 1.0 1 23 224 246 224 246 0.98 2 10 0.47 48 5.4 0.1 3 23 271 292 269 292 0.94 3 10 0.00052 0.052 14.7 0.3 2 23 314 335 313 335 0.95 4 10 0.00011 0.011 16.9 1.5 1 23 339 361 339 361 0.98 5 10 0.00028 0.029 15.6 0.2 1 23 368 391 368 391 0.97 6 10 5.9 6e+02 2.0 0.1 3 23 399 420 397 420 0.82 7 10 5.2e-05 0.0053 17.9 1.7 1 23 426 449 426 449 0.97 8 10 0.00011 0.011 16.9 1.3 1 23 455 477 455 477 0.98 9 10 7.1e-06 0.00072 20.6 0.9 1 23 483 505 483 505 0.98 10 10 1.5e-06 0.00015 22.7 3.3 1 23 511 533 511 534 0.96
Sequence Information
- Coding Sequence
- ATGGCGGAAATTAATATAAAGAAAAATCAAGGGCCTCTAATAAACCCTGCGCTGTGTCGTTGTTGCCGCTCAATAAAGAAATGTCGACTGTTAACTAATGAATACGAGTACATGGATACGAAAGAAGTTTATTCTGATATGTTGATGGATGTTTTTGGTCTTCTTGTAGATGGTGATAGTAAAGACTGTTGTATATGTGCAACATGTGTGTCTCGACTTCGTGAAGCAAGTGCGTTTAGACAACAAGTGCTACAATCTGAGCAAATGTTTTTGGAAGCAAGGTTGCAGAATAAGGAAGAAATTGATGGAATAATCAAGACTGAGATAAAAACTGAGCCTGTATGTGATTCTGATACACCTGATATGCCAGATGAAACACCAGAAGACCAAAATGAAGAAAATTACACAAGATTAAATACAAAAAAGATAACAAATAATAAGCTGAAACAACTAAAGAAAACTAGAAATGGACACAAAAGTAAAGTTAGCAAAGAATTGCAGAATAGTAAGAGACTGCGAGTGAAATTGGACAAATTGTTGATAACAAAAATTCTTCCCAAGAAAATGGTGTCAAAAGACATTATAGACCACAACCAAATGGCCTACTCCAACACAGTGGCAATAGTACAAAATTCATTTGTCTGTCCGTTCCACAATAGGGTCAGTATTTACTATTGCTACTATTGCAAAGATCAATTCACTAATCCAAGTGAACTGAGAGACCACACTTTGATTCACGATCCGAAAGAACTATTCGAAGACACAACGGAAAATAAGAAAATACCCAAAATTGACATAACAAGAATTGATTGTCGACTTTGTCCAGAAAAAATTGATGATTTGGAAACTTTTAAGAACCACATCACTAGTGTTCATGAAAAGTCAATTTATCCTATCACTAACGAGTTCCTTAAGTTCCGTTTAACGTTGAATAATTTGAGTTGCACAGAATGTGAGAATGTTTTTCCTTATTTTGATTCGTTGAAGAAACACATGATCGACCATTTTGGTACATTCACTTGCGATATATGTGGGACTTGCTTTCTAGAACAGGCTTCTCTACGTACTCATATAAAATCTCATACAAAAATCGATTTAAATTTCCCCTGTGAAATATGTGGCAAGAATTTGAAATCTAAATACAGCAGGACTTTACACATTGCTACAGTACATGAAAAAAAACCTTTTGTCAACTGCTACAAGTGTGACGCTGCCTTCCTCTCATACGCTCTACGAAACAGACATTTGATTGAAGTTCACGGTGACAAAAGAACATTTCCTTGCAAATTATGCGATAAAGTGTACAACAGGAGGAAAACACTTATGGAACATAATCGAAGGAATCATTTAAAAGTGTATAGACATCAGTGTGAATTGTGCGATCAAAGATTTTATTTGCCGTCCCGTTTGAAAGAACATATGGCGACCCATACCGGTGAAAGGAACTTCAGATGTGAGTTTTGTGATAAAAGTTATCCTCGACTCCAGTCGTTGCAAGAACATGTGCGCAGTCATAATAGTGAAAGAAGGTTCAAATGTGATATATGTAATTCAAGTTTTACACAAAGTGGTAGTTTAAAAAGTCATATGAAAAGTCATCATCAGGTTTTTGACATGGATGGCAGTTTTAAATTGTAG
- Protein Sequence
- MAEINIKKNQGPLINPALCRCCRSIKKCRLLTNEYEYMDTKEVYSDMLMDVFGLLVDGDSKDCCICATCVSRLREASAFRQQVLQSEQMFLEARLQNKEEIDGIIKTEIKTEPVCDSDTPDMPDETPEDQNEENYTRLNTKKITNNKLKQLKKTRNGHKSKVSKELQNSKRLRVKLDKLLITKILPKKMVSKDIIDHNQMAYSNTVAIVQNSFVCPFHNRVSIYYCYYCKDQFTNPSELRDHTLIHDPKELFEDTTENKKIPKIDITRIDCRLCPEKIDDLETFKNHITSVHEKSIYPITNEFLKFRLTLNNLSCTECENVFPYFDSLKKHMIDHFGTFTCDICGTCFLEQASLRTHIKSHTKIDLNFPCEICGKNLKSKYSRTLHIATVHEKKPFVNCYKCDAAFLSYALRNRHLIEVHGDKRTFPCKLCDKVYNRRKTLMEHNRRNHLKVYRHQCELCDQRFYLPSRLKEHMATHTGERNFRCEFCDKSYPRLQSLQEHVRSHNSERRFKCDICNSSFTQSGSLKSHMKSHHQVFDMDGSFKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00780468;
- 90% Identity
- iTF_00780468;
- 80% Identity
- -