Hnum029764.1
Basic Information
- Insect
- Heliconius numata
- Gene Symbol
- -
- Assembly
- GCA_016802625.1
- Location
- JAEBDU010014094.1:6289-9157[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.4e-06 0.00014 22.9 0.8 1 23 108 130 108 130 0.97 2 9 0.00012 0.013 16.7 5.5 1 23 135 157 135 157 0.99 3 9 2.1e-08 2.1e-06 28.6 1.3 1 23 163 185 163 185 0.99 4 9 0.00022 0.022 15.9 0.4 1 21 191 211 191 212 0.95 5 9 1.6e-06 0.00016 22.6 1.4 2 23 224 245 223 245 0.97 6 9 1.1e-05 0.0011 20.0 0.9 1 23 251 273 251 273 0.97 7 9 0.0009 0.09 14.0 2.4 1 23 279 301 279 301 0.97 8 9 0.00064 0.065 14.4 6.4 1 20 307 326 307 329 0.95 9 9 1.2e-05 0.0012 19.9 0.4 2 23 336 357 335 357 0.97
Sequence Information
- Coding Sequence
- ATAATAGAAAATAGTAATAACATAAAGTTACCTGAATTTGTAAATGTTAAACAGGAACCGTATTTACCGGATTTCGATTCAGAAACCCCTGAAACAAATATATATAATGACATCAAACCAAATATTAATATAAAAACTGAACCAGGATTACAATCTATGAATATCGAAGTTAAACAAGACCCTTTGGACTTTGAAGCTGAGGAGGAGAAATTAGAAGTTTTTAAACCTATAATACAATCTGTTAAATCAGAATCTTCTAACATTTATATTAGTGATGTATCAGAAGAAGTACTAAATCTAAACTCGACTAAAGACGGTAAATTCATGTGTCCAATGTGTTATAAAAGATTTGCGAGCAAATCTAACGTACAACGGCACATTCTATTACATACGCGAGAAAAATACGAATGCAAAACGTGTTTCCGTCAATTCGTTAATCCCCACCATTACGAAAGACACTTGTTAACCCATTCAACGGAAAAACGGTATAAATGCGACGATTGTGGCAAATTGTTTCGAACCGCCTCCAATTTGAAACAACACAAAAGAATCCATCGGGTCGTTAAACCGTTCGAATGTGAACAGTGTGAACGTAAATTCGATCTAAAGGCTAATTTACTAAGACATCAAAGCAGAGGAAATTGTAAAAAACTGAACAAAGAACCGATCGTATGCACTATTTGTGATAAAACGTTTAAAAAAGAGTTTTTGTTGAAAAGTCATTTACGGAAGCACACAACAGAAAAGCAGTTCATCTGTGATAAATGTCAAATGGCCTTCAAATATAAGTCTACCCTAATTCGGCATGTTCAACTCCATAACGGGATTAAGCCGTATTCTTGTAAGATATGCCGAAAGACTTTCACTCATGCCGGCCGCATTAAGCCTCATATGAGGCTTCACACTGGTGAAAAACCTTATAAATGCCCAGTCTGTAATAAACTATTCGCTCACAAACATAATATGCAACGACATACATTATGCCATGCGAAAAAAAAACACCTAGTTTGTGATGTGTGTAACAAAACCTTCCCTATAGAAAGTCGGTTAAAATATCATATGAGAACTCATACTAAAGCGAAACATTAA
- Protein Sequence
- IIENSNNIKLPEFVNVKQEPYLPDFDSETPETNIYNDIKPNINIKTEPGLQSMNIEVKQDPLDFEAEEEKLEVFKPIIQSVKSESSNIYISDVSEEVLNLNSTKDGKFMCPMCYKRFASKSNVQRHILLHTREKYECKTCFRQFVNPHHYERHLLTHSTEKRYKCDDCGKLFRTASNLKQHKRIHRVVKPFECEQCERKFDLKANLLRHQSRGNCKKLNKEPIVCTICDKTFKKEFLLKSHLRKHTTEKQFICDKCQMAFKYKSTLIRHVQLHNGIKPYSCKICRKTFTHAGRIKPHMRLHTGEKPYKCPVCNKLFAHKHNMQRHTLCHAKKKHLVCDVCNKTFPIESRLKYHMRTHTKAKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -