Hnum012109.1
Basic Information
- Insect
- Heliconius numata
- Gene Symbol
- -
- Assembly
- GCA_016802625.1
- Location
- JAEBDU010012640.1:18708-19199[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-13 6.3e-10 39.3 0.0 1 41 18 58 18 61 0.93 2 2 4.6 7.6e+03 -2.6 0.0 22 30 109 117 108 118 0.77
Sequence Information
- Coding Sequence
- ATGCCACGAAAGAACTTGACACCCATTTCGAATAAAAAAAGGAAGACCTGGGATCCTGAAAAAATGAAAAGAGCGATTGAAGCCGTCCGAAATAAAACTATTGGTTACAAAAAAGCAGTCAAAGAATTTGATGTACCGAGATCTACTTTAAAACGATTAGTAAAAGATACCGAACAATCTTTAGATATGATAGTGAATAAACCACTCGGAAGAAAGCCTATCCTGCCAACTGTTTTGGAGAAACGTTTACTGAAATATATTTTATTCATGGAGGCCAGGTTTAATGGGTTAACTAGACAAGATGTCAGGCGGGCTGCTTACAGGCTTGCCTTAAAATATAACATAGCAAATAATTTCAGAAACGATATGGCAGGCAGAGCGTGGTTAGACCATTTTTTGGATAGACACAAAGACGAATTATCTCTGCGTAAGCCAATAGGTACGTCACAAGCTCGTGTCCAAGGATTTAACAAAGACGCTTCTCTTATATAA
- Protein Sequence
- MPRKNLTPISNKKRKTWDPEKMKRAIEAVRNKTIGYKKAVKEFDVPRSTLKRLVKDTEQSLDMIVNKPLGRKPILPTVLEKRLLKYILFMEARFNGLTRQDVRRAAYRLALKYNIANNFRNDMAGRAWLDHFLDRHKDELSLRKPIGTSQARVQGFNKDASLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -