Hnum000992.1
Basic Information
- Insect
- Heliconius numata
- Gene Symbol
- -
- Assembly
- GCA_016802625.1
- Location
- JAEBDU010013662.1:483-2027[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.8e-12 1.1e-08 35.3 0.0 4 39 66 102 64 106 0.91 2 2 3.9e-12 6.5e-09 36.1 0.2 2 39 118 155 117 158 0.92
Sequence Information
- Coding Sequence
- GGCACGTCCCTCATTACTAGGCATATGGAAATGATAAATGAAGCGGCGGACTCGTCGGAGTTCGTACCACTGATGATCAAAGACGAGCCGAGTTCAGAAGGCGAACAACCACATCTAAGCAGTGATGACACAGACTCAAACGGTCCGACACAAGAAACATTCAGCCGATCGAGTCCCAAGAGCTGGACTCAACTAGACATGGAGAAAGCTCTGGAAGCTTTGAGAAAACATCACATGAGTTTGACTAAGGCATCAGCAACCTACGGTATCCCATCAACTACCCTGTGGCAAAGGGCACACAGGCTCGGTATAGATACTCCCAAAAAGGAAGGGTCTTCGAAGTCGTGGAGCGAAGCGGACTTAAAAGGAGCTTTACACGCTTTACGAGCCGGCGCCATATCTGCTAATAAGGCTAGCAAGGCTTATGGTATACCATCCAGCACTCTGTACAAGATAGCGCGGCGCGAGGGCATCCGCCTGGCCGCGCCGTTCAACGCCGCGCCCACCGCCTGGCG
- Protein Sequence
- GTSLITRHMEMINEAADSSEFVPLMIKDEPSSEGEQPHLSSDDTDSNGPTQETFSRSSPKSWTQLDMEKALEALRKHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSSKSWSEADLKGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00781757;
- 90% Identity
- iTF_00781757;
- 80% Identity
- -