Basic Information

Insect: Heliconius nattereri
Gene Symbol: -
Assembly: GCA_013403645.1
Location: JAAIXI010000236.1:14634671-14637398[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.3 21 5.9 0.6 1 20 247 266 247 268 0.94

2 10 0.11 7.3 7.4 0.3 2 23 297 319 296 319 0.95

3 10 0.00018 0.012 16.1 0.2 1 23 342 364 342 364 0.98

4 10 0.00019 0.013 16.1 0.2 1 23 368 391 368 391 0.96

5 10 0.012 0.81 10.4 0.8 1 14 396 409 396 410 0.91

6 10 0.0061 0.41 11.3 1.1 2 23 426 448 425 448 0.91

7 10 0.00087 0.059 13.9 1.9 1 23 455 478 455 478 0.98

8 10 0.032 2.2 9.0 2.9 2 23 485 506 484 506 0.97

9 10 4.2e-06 0.00029 21.2 3.8 1 23 512 534 512 534 0.99

10 10 6.2e-05 0.0042 17.6 1.4 1 23 540 562 540 563 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.3	21	5.9	0.6	1	20	247	266	247	268	0.94
2	10	0.11	7.3	7.4	0.3	2	23	297	319	296	319	0.95
3	10	0.00018	0.012	16.1	0.2	1	23	342	364	342	364	0.98
4	10	0.00019	0.013	16.1	0.2	1	23	368	391	368	391	0.96
5	10	0.012	0.81	10.4	0.8	1	14	396	409	396	410	0.91
6	10	0.0061	0.41	11.3	1.1	2	23	426	448	425	448	0.91
7	10	0.00087	0.059	13.9	1.9	1	23	455	478	455	478	0.98
8	10	0.032	2.2	9.0	2.9	2	23	485	506	484	506	0.97
9	10	4.2e-06	0.00029	21.2	3.8	1	23	512	534	512	534	0.99
10	10	6.2e-05	0.0042	17.6	1.4	1	23	540	562	540	563	0.95

Sequence Information

Coding Sequence: atggaaaataatttgaacagTACTCGGTTTGGTAAATGCAGATTTTGCTTCAGCAAAGGAAATCATAGAGACATTATGAAAGAGTACAACTGGAAAGGCGTATCTGAGGTTTATTTCGATGTATTTCAAGAATGCttcaatttatatTTATGCACAAATGGGAGAAGTTctcttatatgtatatcttgtatagaaaaattaagagATGCCAATACATTTCGTACAATGGTTGTCAATGCTGAAAGACATTTATTAGATACATTAGATGAAAAacagacattttttattaatttaaGAGAACCATTAATGGAAGTTGATGTGAAAGTAGAAAAAGACACTGAATTAAAAAGAAAGGAGAATAATTTACATGGAAATTTGGATGATGATGATGTCATCTTAGATAAATATGAtgatattttgccagataatatatcaaatacagATGGTCCAGTAGAAGGGGAAGCAGAACTTTTAGCAAGGTTCCCACCCGGTACATTAAAACCATTGCCAACCAGAAAAACCATGGAATATACATGTAAACAGTTTGTTAAAGAATTAGAATTATTGAAAGgtaaaaaaataactggtaggtcaataaaaaatttagtaaCACATACAATACCAAATAGAATAAGAAACACCGTGTACATGACGGAGAAGCTAGCCCACATAGCCAATGTATCAACTATTCTGGAACATTCTAATCTAACTGCTTTCAAGACTAGACGACGATCTGGTTTTCCCTGTTTTTACTGCAGACGTATATATGAAAACTTCGAAGTTTTAAAAGATCATCAGTATAATGATAAATGTAaggctaatttaaaaaaaatgttggccAAGTGTATAATGGACCGACTAGTTGTATATGTTCatataacagaaataaaatgtactataTGTGATCAAATTCAAGCAAATTTAAACGAATTGAAGTCACATTTGACAAAAACCCATAAAAAGAAACTCCACCCTGAATATGGAGACAGAATTATACCCTTCAAGCTGACGAAGACGAACGAATATGAGTGTCAAACGTGTGGTTTTAATTTCGAAACTTTTGGTGCAATCGAGCGTCATATGAACGTTCATTATAGGAATTTCGTTTGTGATCAGTGCGGTGCCGGTTACGTCACCCAAAGTCGATTAAAGGTGCATTTAAAATACTCCCACATACAGGGTGTCTTCCCTTGTGATATATGTAACAAAGTGTTCAATACTCAATACAAACACAAGTGTCATGTCGATGCAGTGCATaaaatggttaaaaaaaataagtgccCAAAGTGTCCCGAACGGTTTACGGATTACTTCGACCGTCATCAACATATGGTGGAGGCGCATGGAGAACAGCCACTAAGGTACCGCTGCAATGTTTGCATGTCCGTCTTCAAACGGCGTTACGCCCTATCTCTACACATGAAACGACGTCATCTGGAAGTTAAGGAGAAAGAGTGTGATTTGTGTACATACAAGTGTCATACTATAGCCGAGTTGAAGGCTCATATGATCAAACATAATGGTGAAAGAATGTATGAGTGTTGTGTGTGTAAGAAATCGTACGCTAGgaagaaaactttaaaagaaCACATGCGTATACATAATAATGATCGTAGGTTTGTCTGTGTGGTATGCGGTCAGGCATTTGTACAGAATTGTAGCCTAAAAGGTCACATGAAGGCTCATCATGCAGACTATAGTATAGGGATAAGGAGAAGTTAG
Protein Sequence: MENNLNSTRFGKCRFCFSKGNHRDIMKEYNWKGVSEVYFDVFQECFNLYLCTNGRSSLICISCIEKLRDANTFRTMVVNAERHLLDTLDEKQTFFINLREPLMEVDVKVEKDTELKRKENNLHGNLDDDDVILDKYDDILPDNISNTDGPVEGEAELLARFPPGTLKPLPTRKTMEYTCKQFVKELELLKGKKITGRSIKNLVTHTIPNRIRNTVYMTEKLAHIANVSTILEHSNLTAFKTRRRSGFPCFYCRRIYENFEVLKDHQYNDKCKANLKKMLAKCIMDRLVVYVHITEIKCTICDQIQANLNELKSHLTKTHKKKLHPEYGDRIIPFKLTKTNEYECQTCGFNFETFGAIERHMNVHYRNFVCDQCGAGYVTQSRLKVHLKYSHIQGVFPCDICNKVFNTQYKHKCHVDAVHKMVKKNKCPKCPERFTDYFDRHQHMVEAHGEQPLRYRCNVCMSVFKRRYALSLHMKRRHLEVKEKECDLCTYKCHTIAELKAHMIKHNGERMYECCVCKKSYARKKTLKEHMRIHNNDRRFVCVVCGQAFVQNCSLKGHMKAHHADYSIGIRRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01079334;
90% Identity: iTF_00775582;
80% Identity: -