Basic Information

Insect: Heliconius nattereri
Gene Symbol: -
Assembly: GCA_013403645.1
Location: JAAIXI010000234.1:2007727-2012994[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.1e-05 0.00073 20.0 5.7 1 23 270 293 270 293 0.97

2 8 2.6e-06 0.00018 21.9 2.8 2 23 298 319 297 319 0.96

3 8 0.053 3.6 8.3 0.9 2 23 327 347 327 347 0.96

4 8 0.00013 0.0089 16.5 0.8 2 21 354 373 353 378 0.93

5 8 1.8e-05 0.0013 19.2 1.2 1 23 386 409 386 409 0.96

6 8 0.00095 0.065 13.8 0.2 1 23 415 438 415 438 0.97

7 8 0.00016 0.011 16.2 1.3 3 23 450 470 449 470 0.96

8 8 3.8e-06 0.00026 21.4 0.7 2 23 477 499 476 499 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.1e-05	0.00073	20.0	5.7	1	23	270	293	270	293	0.97
2	8	2.6e-06	0.00018	21.9	2.8	2	23	298	319	297	319	0.96
3	8	0.053	3.6	8.3	0.9	2	23	327	347	327	347	0.96
4	8	0.00013	0.0089	16.5	0.8	2	21	354	373	353	378	0.93
5	8	1.8e-05	0.0013	19.2	1.2	1	23	386	409	386	409	0.96
6	8	0.00095	0.065	13.8	0.2	1	23	415	438	415	438	0.97
7	8	0.00016	0.011	16.2	1.3	3	23	450	470	449	470	0.96
8	8	3.8e-06	0.00026	21.4	0.7	2	23	477	499	476	499	0.96

Sequence Information

Coding Sequence: atggaTGAAAatgcaagaaaaatattaaaaacaatatgttgTACATGTCTAAGTGTTGACAGAAAGTTATCacaattatctaaaataaataatggtgtaaataatttgtatttcctTCTTTCTTATGAATCTGATGCTTatgatgtaatTTTCTACAGAAGTGCCACTCATCTTCTGATATGTTGGGAATGTGAAATGATAATGcagaaattacttaaatttagaAATCAAGCTGCCAAGGCTCAAAAACAACTGACTGATATAATAGATGGAAAAATTGATGATGTATGTGAAGTAAAATCCAtgtcacaattaaattatttccaccAAATAgactataataaacaatatacagaaaatgatgaaactttaacatattttatggaTTGCGGTCAAGATTTAGTCATTGAAGATATAAAGTCAGAGATTGATTCAGATATTCCATTATGTGAATTAACAATtgcaaatgaagaaaaaaatgttacaaatttctttgaaaataaaataaaagcgaaaagaaaaaaggatacacatacaaaatttaatcataataatgttttcgataatataataataaatagagaatctaataataaaatagtatttgatAAAAAGGAATTAGAAGTTAGTAAAGTAAGAAGTAAAGCAAGTAGATCAAAAATAAACAGTTCTAAATTTAGTTCTAAAAATGAActgtcaaataaatttaatgaaaatatggaacagataaaagaaaataaagtaacttctaaaataattgtaggcaataaaaaaataccaataaacaaaaagaaaacacaaTTGAGTTTTGTGTGTACTgaatgtaataaatgttttacgaataaaagtcaaaaatacaagcacatgaaaataaatcacagTTCGGGCATACCATGTTCCATCTGTGGTAAAACTTTTGCGTTTAAACATCATTTGAAAAGTCATGAGAGAATCCATTCAATCCCACTAAGCCGTGAGCAGTGTCCCACTTGTGGGAAAATGGTCCGTTGTGATCTAACCAAAGCCCACGCTCGAGTacacacagacagacagagagtGGAGTGTCTGAAATGTGATAAAAGTTTTGTATCGCAAGAGTCATAcagaaatcatttaaaatatacatcaaATCATACTACTGTGGATGTTTTAAAatttaAATGTACAATGTGTCAAAAAGCGTATCGGTCTAAAGGAGAGCTAAGAGATCATGTGAATTATCAACATATGGGAAAAACACAACACAAATGTCCTATTTGTGATAAAGCAATAGCAACTCGTCGTGGCATAGCGCGTCACGTCAAAAGAGCTCATCAAGGTATTAAAGAAAACGCGaaagataaaatatgtcaGACTTGCGGTAAAGTATTTCGGgaCAAAAGATGTCTCTTAGAACACGAACTAATACACAGCGGTGAGAGACCCCTGTCCTGTGCTATATGCGGGCGGACGTTCAGACAGCGCGCCTCTCTATATACGCACAGACGACGGGTGCACAACATACAGCCCAATGTGAGGATTGTGCAACACACTGGGGATACTGACATGACTGACAAAATTGTAATTGGTAATGTGACGTTGGGAGAATAA
Protein Sequence: MDENARKILKTICCTCLSVDRKLSQLSKINNGVNNLYFLLSYESDAYDVIFYRSATHLLICWECEMIMQKLLKFRNQAAKAQKQLTDIIDGKIDDVCEVKSMSQLNYFHQIDYNKQYTENDETLTYFMDCGQDLVIEDIKSEIDSDIPLCELTIANEEKNVTNFFENKIKAKRKKDTHTKFNHNNVFDNIIINRESNNKIVFDKKELEVSKVRSKASRSKINSSKFSSKNELSNKFNENMEQIKENKVTSKIIVGNKKIPINKKKTQLSFVCTECNKCFTNKSQKYKHMKINHSSGIPCSICGKTFAFKHHLKSHERIHSIPLSREQCPTCGKMVRCDLTKAHARVHTDRQRVECLKCDKSFVSQESYRNHLKYTSNHTTVDVLKFKCTMCQKAYRSKGELRDHVNYQHMGKTQHKCPICDKAIATRRGIARHVKRAHQGIKENAKDKICQTCGKVFRDKRCLLEHELIHSGERPLSCAICGRTFRQRASLYTHRRRVHNIQPNVRIVQHTGDTDMTDKIVIGNVTLGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00776207;
90% Identity: iTF_00782073; iTF_00780489;
80% Identity: -