Basic Information

Insect: Heliconius nattereri
Gene Symbol: -
Assembly: GCA_013403645.1
Location: JAAIXI010000218.1:63959-68142[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.12 8.2 7.2 1.2 3 23 197 217 195 217 0.90

2 13 0.17 12 6.7 0.4 1 23 223 246 223 246 0.95

3 13 0.017 1.1 9.9 0.9 1 21 256 276 256 277 0.95

4 13 0.0085 0.58 10.8 4.5 1 23 293 315 293 315 0.98

5 13 4.6e-06 0.00031 21.1 0.6 1 23 324 346 324 346 0.96

6 13 1.2e-06 8.3e-05 22.9 3.2 1 23 352 374 352 374 0.99

7 13 5.4e-06 0.00037 20.9 3.9 1 23 380 402 380 402 0.99

8 13 1.4e-07 9.8e-06 25.8 1.8 1 23 408 430 408 430 0.96

9 13 0.00032 0.022 15.3 0.5 1 23 436 458 436 458 0.97

10 13 0.00015 0.01 16.3 0.1 1 23 464 486 464 486 0.96

11 13 0.0032 0.22 12.1 6.4 1 23 492 514 492 514 0.97

12 13 4.6e-07 3.1e-05 24.2 1.2 1 23 520 542 520 542 0.99

13 13 0.0026 0.18 12.5 0.7 1 20 637 656 637 659 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.12	8.2	7.2	1.2	3	23	197	217	195	217	0.90
2	13	0.17	12	6.7	0.4	1	23	223	246	223	246	0.95
3	13	0.017	1.1	9.9	0.9	1	21	256	276	256	277	0.95
4	13	0.0085	0.58	10.8	4.5	1	23	293	315	293	315	0.98
5	13	4.6e-06	0.00031	21.1	0.6	1	23	324	346	324	346	0.96
6	13	1.2e-06	8.3e-05	22.9	3.2	1	23	352	374	352	374	0.99
7	13	5.4e-06	0.00037	20.9	3.9	1	23	380	402	380	402	0.99
8	13	1.4e-07	9.8e-06	25.8	1.8	1	23	408	430	408	430	0.96
9	13	0.00032	0.022	15.3	0.5	1	23	436	458	436	458	0.97
10	13	0.00015	0.01	16.3	0.1	1	23	464	486	464	486	0.96
11	13	0.0032	0.22	12.1	6.4	1	23	492	514	492	514	0.97
12	13	4.6e-07	3.1e-05	24.2	1.2	1	23	520	542	520	542	0.99
13	13	0.0026	0.18	12.5	0.7	1	20	637	656	637	659	0.93

Sequence Information

Coding Sequence: ATGGTAGACGTATCAAGAACTTGTCGGACGTGTATGAGGATTGGGGAATCTCTACGAGATTTGTTTAGTGTTTttcaaattgataataatactTCTTTGAAGCTTGCCGACATTGTCATCCAAGCAACTTCTCTGCAGATTAAAGAAAAAGATGATCTGCCTCAAAAACTTTGTAATGAATGtgaagaaaaattaagaattatgtATTCATTTAGGAAGCAGGCTTTAGAATCTGactttgaattgaaaaaacttattttatcttGTACCTCTATTAAACAGGAGGACAGCGACAATGActttaaaaatgacaattataatgaatttgtaaattattatgatgaagttttattacttaatagtGACTTGTcacaagaaaataatcataGAGGTAGacataagaaaaaattaaatgctgagagtgagaaatatttaaataaaaataatccagCTGGAGCTGAAACCATCTGCCTTAAGAAATTAAGTAatagcttatttttaaataaaaatgatgaaataGACACTTTAGCTACTAATGACTCTTTAGATAATGGAATTGTGAAAGCAGAAAGTACCAACACATTTGACTGTATATTTTGCAAGATGACATTTGAGActcatgaatatttattaatacatctGATGGAACATAATGAAAACAAACTATTCAAATGTGATGAATGTAACGAGGAGTATCTGGTGGAGACATCATTAGTTGcccataaaaagaaatatcatcCTTCTATAGAATATTCAAAAGGACAATATAAATGTGTTTACTGTGTGTTAAGTTTCTTTAGTGAGGAAGAACTCTTAAGCCATATTTGTAAATCCAAACCTGATGcaactaaaaatgtaaaagaagaACCTAAGAGATTTAAATGCAAGTTTTGTAATCAGCGTTATGAAAAAAAGAGGTCACTTTTATCTCATTTTAAAGTACACACACGAGAAATAAAAGCAAAGTTGTTTATATGTGACTTCTGTCAGAAGGAGTTCACTCAGAAAGGGGCTTTAAAAAGACATAttgaattacatacaaaagatAAGCGTTATAAATGCACAGAATGTCCAAAGACATATTCCAGGTACGATCAGTTTACGAGTCATCTCAGAAAACACAGTGGCATTAAGCCTTATGTGTGTGAACATTGTGATAAAGGATTTACCCAGCTGTGTTCTTTAAAAGACCACGTCAGGACGCACACGGGCGAGGCGCCGTACCTGTGCGCGGAGTGTGGCAAGAAGTTCAAGAACAACTCCAACCTCCGCCAGCACTTGAAGCGGCACTCCGGCGTCAAGCCCTTCGCCTGTGCGCTCTGTCCGCAGACGTTCTGTGCTAAGGGTCAGATGAAGGCGCACATGGAGACGCACTCGGGCGCGCACCCGTTCGTGTGCGTGGAGTGCGGCGCCGCTTTCACCAAGGCCAACTCCCTCAAGAAGCACTCCATGCTGCACCTCGGCATCAAGCCCTTCGCCTGTGACAGCTGCGAGATGAGTTTCACCTGCAAGGACCACCTCAAGCGCCACCAACGCAAGCACACCGGCGAGAAGCCCTACCGCTGCATGCGCTGTCCGCGCGCCTTCACGCAGAGCAACGACCTGCGCAAGCACATGCGCGTGCACGACGGACTGAACATATACCCGTAcgtatacacacacacacacacacacacacacacacacacacacacacacacacacacacaacacACATGCACGCACGCACATGCGTGCACACGTGCGTGCGCTATCCAGCAGCGCAATGACCTGCGCAAGCGCGTGCACGATGGACAGAATGTATATCCACGCGTACAGACGCAGGCACGCACACAGGTGCACGTGCAATCACACACGATCGAACACAAGTACGTCCAAATACAATCTTATGTCATTACTACGACTGTGTTCAGATGCAGCGTGTGTGGTGTCAAGTTCCGTCTGATGCGCGAGCTGAGGCGGCACTACCCCTCCCACTACGCGGGGGGAGCCCCCGGTGTGGAGGCGGGGGGAGAGGGACAGATCACTATCACATTCAACAGGAACGCGATGGGGGAGGACGCGGCGGACATCACTATTAACATAGACGCGGAGAAGATCAATTAG
Protein Sequence: MVDVSRTCRTCMRIGESLRDLFSVFQIDNNTSLKLADIVIQATSLQIKEKDDLPQKLCNECEEKLRIMYSFRKQALESDFELKKLILSCTSIKQEDSDNDFKNDNYNEFVNYYDEVLLLNSDLSQENNHRGRHKKKLNAESEKYLNKNNPAGAETICLKKLSNSLFLNKNDEIDTLATNDSLDNGIVKAESTNTFDCIFCKMTFETHEYLLIHLMEHNENKLFKCDECNEEYLVETSLVAHKKKYHPSIEYSKGQYKCVYCVLSFFSEEELLSHICKSKPDATKNVKEEPKRFKCKFCNQRYEKKRSLLSHFKVHTREIKAKLFICDFCQKEFTQKGALKRHIELHTKDKRYKCTECPKTYSRYDQFTSHLRKHSGIKPYVCEHCDKGFTQLCSLKDHVRTHTGEAPYLCAECGKKFKNNSNLRQHLKRHSGVKPFACALCPQTFCAKGQMKAHMETHSGAHPFVCVECGAAFTKANSLKKHSMLHLGIKPFACDSCEMSFTCKDHLKRHQRKHTGEKPYRCMRCPRAFTQSNDLRKHMRVHDGLNIYPYVYTHTHTHTHTHTHTHTHTQHTCTHAHACTRACAIQQRNDLRKRVHDGQNVYPRVQTQARTQVHVQSHTIEHKYVQIQSYVITTTVFRCSVCGVKFRLMRELRRHYPSHYAGGAPGVEAGGEGQITITFNRNAMGEDAADITINIDAEKIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00775440;
90% Identity: -
80% Identity: -