Hnat003602.1
Basic Information
- Insect
- Heliconius nattereri
- Gene Symbol
- -
- Assembly
- GCA_013403645.1
- Location
- JAAIXI010000230.1:12344449-12357996[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.98 67 4.3 0.6 5 23 446 464 445 464 0.95 2 11 8e-05 0.0054 17.2 3.3 1 23 480 502 480 502 0.98 3 11 0.001 0.07 13.7 5.1 1 23 508 530 508 530 0.98 4 11 5e-06 0.00034 21.0 3.0 1 23 537 559 537 559 0.99 5 11 1.5e-05 0.001 19.5 0.1 1 23 565 587 565 587 0.93 6 11 5.9e-07 4e-05 23.9 0.1 1 23 593 615 593 615 0.98 7 11 4e-06 0.00027 21.3 1.9 1 23 621 644 621 644 0.96 8 11 0.0048 0.33 11.6 4.2 1 23 650 673 650 673 0.94 9 11 0.00016 0.011 16.3 0.9 2 23 680 701 679 701 0.97 10 11 1.6e-05 0.0011 19.4 1.5 1 23 707 729 707 729 0.97 11 11 0.002 0.13 12.8 0.4 1 23 735 759 735 759 0.94
Sequence Information
- Coding Sequence
- ATGTCCTGCAGGACGAATACAAATCCAAGTTGTTTCATTTGTAACACACGTAATGGTGTAGCTTTGAGAAACGCTAGTAGTTTATTTGGTGAAGATATTTCTCTCACATCAGGCAAAATCTTCACAAATGTAATTGGTGATATAgtggaaaaacaaattaaaaaagacaaCACTcacactaatattatatgtaagaaATGTCAAAAAGCTGTAATGGAATATGATTCTTTACAAGTtagACTAAAATCAATCAAAGTGGAACTTCTCAGCCAATTCAAGAAAAGCCTAGAAAAACACAACATAAACTATGACACATACAACATAATAACGAAAACTGAAACTAAAACAAcagaattaaagaaattagttCTTCCAGCATCTAAATTACAGCCATTGCCACCAGATTTTGTGATAAGAGGTGGAAAATGGCCGATAACAAGGCCAGTTACAGTACCCAAATTACAGCCGATAATGACAATACCATCAtccaatatcaatttaaaagtgACTGTAGGTTCGTCTGTTCTCACACAGTCAATAAACACACTAACaagcaaacaaaaaacaacacCAAACCAAATCATAGATCCAAAAGTAATGATGACGtcaacagaaaataaaaaagaacaaaagaaCATGcccataataataacaaattcgATGAAATCCGATGAAATATTGAGTTCGTCTCATTCAACATATACTTTTTCACAACCGGTATCGACGAACAGTCAAATGTTGAGTTTTAATGTGAATTCGTTGACGAAAGATTTTCTTTCGTCGGCCATTTTGACGAAAGTCGACGAATTTGGTATGGAGAAGATGAAGAAGGAGGATACGGTTGAAAGCGATGTGGATAATAATGAAGAATCTATGGAAATTGATGAAGattGTTCTTTAGCAGTTATAACGACTAATGATAATGaaGCCATAGTAGTGGAGAGTGACAACATTCTCCGCGTAATGTCTGGACAGAAGTTTTTGTATGGCGACAGTGAGATATCACTAGTGATGCCCGACAGTTTGGATAACAACGACGATAATGGGGATGGTCAAgattCAAATGACGAATCTCAAATAGAATTACAAGTGTCCGGCGATGAAGAAACGGCAAATGCTATTATTGCAGCTGCGcaagGAGGTGCcttcataaaagtagaaagcGGAGAAATGTTTCAAGTGAAATCAataCAAATAGTGGTAcatgaaaatgataaatttagATGTCTTCtatgtgaaaataatgaaaataaacAAGGCGCCGCGTTTACAGGCGACGCAGATACAACGATGGCTCATTTGAAAACAATACACTCTGCCCGGGCTTACATTTGTAATTGCGGACACGTTGTTAGGAAACGGGCGGATTATGTTAAACATATAGAACAACACGCAcagaaaaataacaacatgCAAATCAcagataaaagtaaaatgcacgagtgtaatatttgtaagaagaaatatactTCGCGAACCTTACTATCGGAGCATCTCAACACACACAGCGGGTCTCGCCCTCACGAATGTCAAGTTTGCGGAAAGACATTCGCCTCCAAATACACGCACCAGTCACACTTGAAAACACATTTAgtgCGTCCTCGTCCTTTCAAGTGCAATCAATGCGGCAAATCGTTCTTCACGATGCAAAATTTGAATCAACACGAGAAAACACACTCTGGTATAAAGGATTTTATATGTAACGTTTGtgGTAAGGCATTCGGAACCCAACACAACCTAGAAGTGCACGGCGTGGTCCACTCCAACACTAAGCCGTTCGTGTGCGGCGTCTGCGGGAAGGCATTCGCGCGCCGTGCCGAGGTGCGCGACCACATGCGGACACACACCGgTGAACGTCCCTTCTCATGTGACATCTGTGGAGCTCGCTTCACGCAACGCTCGAATCTACACTCACATCGGCGCGCAACACATTTAGATGATAAGCGTTATCACTGTACCATGTGTTCTAAACGGTTTAAACGACGACgTCTCTTAGATTACCACGTGAAAGCGTCCCACACAGGCGAGAGACCGCTCAAATGTGAAATATGTCGCGCAACATTCGTATATCCGGAACATTATAAGAAACACGCTAGAATACATAGCGGCGAGAAACCTTATACTTGTGAGGTATGCGGCAAATCCTTCAATTCCCGAGATAATCGTAATACACATCGTTTCGTACATAGTGACAGAAAACCATACGAGTGTGTTGTATGCGGGGCCGGTTATATGAGGAAACAGTTGTTGTACCACCATATGAATACCAGCGGTCATTTGGCTGAATCAATAGTGGTGAATCAACCAAGAGTCACTAAATTAACGGATaatGTTATTACAACTCAATCAATAATAGTAGACACATCCAAATCCGGGAAATTTCCAGAAACTACATATGAAGTGGCTGAcgaattacaattacaatctGACGATAAAATTGTCGaTAGTGATAACACAACGAAGTTCTTTATAACGGGTGATAAGAAGATTCTATTGCAAGATGATAACATAGAAGGCAACATAAAAAGTGATGGTACAATACTGGACAACGTGTCTGGCGACCATTTGACAGAACaacagaCAAGTAACGCAATACAGTTAGTGCCAGTGGAACTACCAGACGGCTCCAGCGGATGGGTAGCTTTAAACtcataa
- Protein Sequence
- MSCRTNTNPSCFICNTRNGVALRNASSLFGEDISLTSGKIFTNVIGDIVEKQIKKDNTHTNIICKKCQKAVMEYDSLQVRLKSIKVELLSQFKKSLEKHNINYDTYNIITKTETKTTELKKLVLPASKLQPLPPDFVIRGGKWPITRPVTVPKLQPIMTIPSSNINLKVTVGSSVLTQSINTLTSKQKTTPNQIIDPKVMMTSTENKKEQKNMPIIITNSMKSDEILSSSHSTYTFSQPVSTNSQMLSFNVNSLTKDFLSSAILTKVDEFGMEKMKKEDTVESDVDNNEESMEIDEDCSLAVITTNDNEAIVVESDNILRVMSGQKFLYGDSEISLVMPDSLDNNDDNGDGQDSNDESQIELQVSGDEETANAIIAAAQGGAFIKVESGEMFQVKSIQIVVHENDKFRCLLCENNENKQGAAFTGDADTTMAHLKTIHSARAYICNCGHVVRKRADYVKHIEQHAQKNNNMQITDKSKMHECNICKKKYTSRTLLSEHLNTHSGSRPHECQVCGKTFASKYTHQSHLKTHLVRPRPFKCNQCGKSFFTMQNLNQHEKTHSGIKDFICNVCGKAFGTQHNLEVHGVVHSNTKPFVCGVCGKAFARRAEVRDHMRTHTGERPFSCDICGARFTQRSNLHSHRRATHLDDKRYHCTMCSKRFKRRRLLDYHVKASHTGERPLKCEICRATFVYPEHYKKHARIHSGEKPYTCEVCGKSFNSRDNRNTHRFVHSDRKPYECVVCGAGYMRKQLLYHHMNTSGHLAESIVVNQPRVTKLTDNVITTQSIIVDTSKSGKFPETTYEVADELQLQSDDKIVDSDNTTKFFITGDKKILLQDDNIEGNIKSDGTILDNVSGDHLTEQQTSNAIQLVPVELPDGSSGWVALNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00621409;
- 90% Identity
- -
- 80% Identity
- -