Hnat017916.1
Basic Information
- Insect
- Heliconius nattereri
- Gene Symbol
- -
- Assembly
- GCA_013403645.1
- Location
- JAAIXI010000236.1:14522277-14525374[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.4 1.6e+02 3.1 0.4 1 23 129 152 129 152 0.91 2 18 1.2 84 4.0 0.4 3 23 178 199 176 199 0.92 3 18 0.064 4.4 8.1 0.1 1 23 223 245 223 245 0.96 4 18 0.00027 0.019 15.5 0.2 1 23 249 271 249 271 0.98 5 18 0.001 0.071 13.7 2.0 1 23 276 299 276 299 0.95 6 18 0.01 0.69 10.6 0.3 2 23 306 328 306 328 0.92 7 18 0.046 3.1 8.5 6.4 1 23 335 358 335 358 0.96 8 18 0.00018 0.012 16.1 5.4 1 23 364 386 364 386 0.97 9 18 0.21 14 6.4 2.4 1 21 517 537 517 540 0.90 10 18 0.015 1 10.0 2.8 2 23 566 587 565 587 0.96 11 18 0.0043 0.29 11.8 0.4 1 23 609 631 609 631 0.98 12 18 1.7e-05 0.0012 19.3 0.9 1 23 635 657 635 657 0.99 13 18 3.2e-05 0.0022 18.4 0.3 1 23 662 685 662 685 0.96 14 18 9.2e-05 0.0063 17.0 0.6 2 23 692 714 692 714 0.97 15 18 4.4e-05 0.003 18.0 0.4 1 23 721 744 721 744 0.98 16 18 0.0019 0.13 12.8 2.2 2 23 751 772 750 772 0.96 17 18 6e-07 4.1e-05 23.9 0.6 1 23 778 800 778 800 0.98 18 18 9.2e-05 0.0063 17.0 1.0 1 23 804 827 804 827 0.96
Sequence Information
- Coding Sequence
- ATGGGGAGAATACAGAGTTTGTTTCTGTTTTTAGGCGCGGTTTGTGTATCAACGGAAAAACAGGCGCCAGCAAGGATTATTCCACTTTTTCAAGTGGCATATGATCGAACTCTATGTAAACCTTTGGGAACAGTAACAGCTTTCCGGAAATTACGCCTCAAAAGCAAAATTGAAGTACCATCACCTCCACCTGCAGTGTCCTATACGCCATCCCGTAGCCCATCACCTTTGTCAATAGGAAAAACAAGTACTACTCCGATCAAAGACGTCATACCTTTCAATCCTGtaccaaaaaataacaaaaatcaaGCAGATTACCGACAAAATGCACTGACTGTATTTGAATTCTCTACTGTTTATCCATTTATATACGGAAACAATAAGTTCAAATGCTTCGTTTGCGCTGAACCATTTCTCGAAACTCCTTTCTTGAGGCAACATATGAAGGAGACTCACACTTTTTCTCCACTAAAGAGATTAATAAACAATCGGAGAGAAAATGTACTTAAAGTTGACGTTGGtgaattaatatgtaaattgtgtCCAAACAAACCAAAAAATTTGCAAGACCTTAAAAATCATTTGAAACAAATTCATGAAAAACCTATTGATCCTAATTTACAAGATAATATGATCCCGTTTAAATTGGAAGAAGAACAAGGCTCttataaatgtgtaatatGTGAACAAGTGTTTATAAAAGTGCGCATACTTGTGATCCACATGagtgttcattttaataattatagctGTGAAATTTGCGGGTCAGGTTTCATGACATTACGTCTTCTGAAAAAGCATTTAGAAGTACACGAAACTGGCAACTTTCCGTGCGATAAGTGTAATAAGGTATTCAGTACCACACATAAAAGATCTTTACATATACGTGGTGTTCACCTCAAGCAATATCCACGCCGTTGTCCGATATGTCCTGAACGATTTAACTCAAACTATAGGCGGACTATTCATTTACAAGATGTCCACAATCAATCCACGAGAGTTCACAAATGTGAAACCTGCGGTCGTGGCTTCAATTTGAAATATCACTTGATCTGTCACACGAGATCGGTGCACTTACAAGAAAGGAACCATCAGTGTAAAATCTGCTTGCAAAGATTTTGTAACAAAGAAACTCTTAAACGACATATGGTGATCCATACGGgcgTCATCACAGAGGGCGATTTCACAATTATATTGAAAGATTTAAATGGTGACCAAATAGAACTTAAAGTACTGAAATAtcctataaatattgaaaatctgACATGTGAATATGAAGATAATTCGCAACGAAAGCAGTATTTGAGTGAACATAGACcacaaaaattatgtaaagaaGTTACAACTGTGTCCGTGTTGAAGGAACCATTGTCAATTGATAAAATTgacttttacaaaaaatgtacggtaaaatctatagaaaaaaatataaaaaggcgTAAAAATCTGAATAAAGCCAATGGGAACAACGTTCATACCTGGAAACAGAATGCACTgacaatatttgaattttcacACGTATATCCTTTCATTCAcgcctttaataaatataaatgcttCGTATGcgcaaaagtatttttagatgcatttcttttaaaaaggcATTCTACCGAATGTCATAGTccaaaagaatttattaaagaGCTGAATAATAGAGCTcgagaaaaaaatttaaaggtcGATGTGACATACCTGCAatgtaaaatatgtgaaaCAGTTTGTCCCAATCTCAATTGTTTGAAAATTCATCTCAAAGATCATGGAAAGCCAATAGATCCAGATTTCCAAGATAATATCATCCCTTTCAAATTGGGAGGTGTGAACTTTCAATGTCAAATATGCGatacaatatttcttaaattgcgGCTTCTAATAATACATATGAGCaagcattttaataattacagctGCGAAACCTGTGGCGCTGGATTTATATCTCTTCATTTACTCAAAAGGCACTTACAAACTCATAAAGTCGGTATCTATCCATGTGaaatatgtcaaaaaatatttactaattcatccaaaaaaataatgcacaTGAGAGGAGTTCACCTTAAACAGTTTCCGAGAACTTGTCCAATGTGCCCTGAAAGATTTAACTCAAATTATCAAAGAACAAAACATTTACGTATAATACATAATCACAGCTCAGGGTTATTTAAATGCGAGACTTGTGGCAGGGAGTACGATTTAAAGTACCAATTGCTAGTACATATAAGATCAGTTCACTTACAAGAAAGAAATCAAGAATGTGGCATATGTAATTCCAGgttcttttctaaatattgtttgtcCAGGCACATGATAATACACACTGGCGAAAGGAACTTTAAATGTGATATTTGTGGGAAAGCCTATGCAAGGAGGAAGAATTTAAAAGAACACGCAAAAAGTCATGAACTTGGACATGTTTGTTCTGTTTGTGGCCGAGAgtttaataatcatatattacTTGTAGcacatatgaataattcacATGTACTATAG
- Protein Sequence
- MGRIQSLFLFLGAVCVSTEKQAPARIIPLFQVAYDRTLCKPLGTVTAFRKLRLKSKIEVPSPPPAVSYTPSRSPSPLSIGKTSTTPIKDVIPFNPVPKNNKNQADYRQNALTVFEFSTVYPFIYGNNKFKCFVCAEPFLETPFLRQHMKETHTFSPLKRLINNRRENVLKVDVGELICKLCPNKPKNLQDLKNHLKQIHEKPIDPNLQDNMIPFKLEEEQGSYKCVICEQVFIKVRILVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHETGNFPCDKCNKVFSTTHKRSLHIRGVHLKQYPRRCPICPERFNSNYRRTIHLQDVHNQSTRVHKCETCGRGFNLKYHLICHTRSVHLQERNHQCKICLQRFCNKETLKRHMVIHTGVITEGDFTIILKDLNGDQIELKVLKYPINIENLTCEYEDNSQRKQYLSEHRPQKLCKEVTTVSVLKEPLSIDKIDFYKKCTVKSIEKNIKRRKNLNKANGNNVHTWKQNALTIFEFSHVYPFIHAFNKYKCFVCAKVFLDAFLLKRHSTECHSPKEFIKELNNRAREKNLKVDVTYLQCKICETVCPNLNCLKIHLKDHGKPIDPDFQDNIIPFKLGGVNFQCQICDTIFLKLRLLIIHMSKHFNNYSCETCGAGFISLHLLKRHLQTHKVGIYPCEICQKIFTNSSKKIMHMRGVHLKQFPRTCPMCPERFNSNYQRTKHLRIIHNHSSGLFKCETCGREYDLKYQLLVHIRSVHLQERNQECGICNSRFFSKYCLSRHMIIHTGERNFKCDICGKAYARRKNLKEHAKSHELGHVCSVCGREFNNHILLVAHMNNSHVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00782008;
- 90% Identity
- iTF_00782008;
- 80% Identity
- -