Hnat017948.1
Basic Information
- Insect
- Heliconius nattereri
- Gene Symbol
- -
- Assembly
- GCA_013403645.1
- Location
- JAAIXI010000236.1:14715394-14722856[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 38 0.0072 0.49 11.1 0.9 1 23 36 58 36 58 0.97 2 38 0.00046 0.031 14.8 1.2 2 23 126 148 125 148 0.96 3 38 0.094 6.4 7.5 0.3 1 20 175 194 175 196 0.94 4 38 0.0022 0.15 12.7 1.9 1 20 239 258 239 262 0.90 5 38 0.18 12 6.6 0.1 2 23 334 357 333 357 0.94 6 38 0.0016 0.11 13.1 0.5 2 23 363 385 362 385 0.95 7 38 0.046 3.1 8.5 0.6 2 23 391 413 390 413 0.92 8 38 0.015 1 10.1 0.8 2 23 450 471 449 471 0.95 9 38 0.027 1.8 9.2 0.0 2 23 499 521 498 521 0.94 10 38 0.094 6.4 7.5 0.7 2 23 542 564 541 564 0.92 11 38 0.00034 0.023 15.2 1.0 3 23 571 592 569 592 0.95 12 38 0.0087 0.59 10.8 1.9 1 23 596 619 596 619 0.95 13 38 0.00084 0.057 14.0 2.5 1 23 720 743 720 743 0.93 14 38 0.019 1.3 9.7 0.2 2 23 771 793 770 793 0.95 15 38 6.1e-05 0.0042 17.6 0.5 1 23 815 838 815 838 0.93 16 38 4.8e-05 0.0032 17.9 2.8 3 23 845 865 844 866 0.94 17 38 0.00012 0.0082 16.7 1.7 1 23 872 895 872 895 0.95 18 38 1.9e-05 0.0013 19.2 1.6 1 23 900 923 900 923 0.96 19 38 0.017 1.2 9.9 3.6 1 23 927 950 927 950 0.97 20 38 0.11 7.3 7.4 3.1 2 23 957 978 956 978 0.96 21 38 1.2 85 4.0 0.5 1 23 1026 1048 1026 1048 0.92 22 38 0.0038 0.26 11.9 3.0 2 23 1086 1108 1085 1108 0.92 23 38 0.013 0.86 10.3 2.0 1 20 1112 1131 1112 1133 0.94 24 38 0.011 0.76 10.4 2.3 1 23 1166 1188 1166 1188 0.97 25 38 0.0052 0.36 11.5 0.7 2 23 1259 1281 1258 1281 0.95 26 38 3e-05 0.0021 18.5 0.4 3 23 1288 1309 1286 1309 0.96 27 38 0.25 17 6.2 2.1 1 23 1314 1337 1314 1337 0.95 28 38 0.0021 0.15 12.7 1.7 2 21 1340 1359 1340 1362 0.95 29 38 0.029 2 9.2 1.8 3 21 1367 1385 1365 1386 0.93 30 38 0.0045 0.31 11.7 0.4 1 23 1437 1460 1437 1460 0.92 31 38 1.3 87 4.0 0.1 2 23 1488 1510 1487 1510 0.95 32 38 0.00016 0.011 16.2 0.1 2 23 1533 1555 1532 1555 0.96 33 38 8.1e-05 0.0055 17.2 0.2 3 23 1562 1583 1561 1583 0.94 34 38 0.074 5.1 7.9 3.0 2 23 1588 1610 1587 1610 0.93 35 38 0.013 0.86 10.3 5.0 1 23 1615 1638 1615 1638 0.97 36 38 8.4e-06 0.00057 20.3 5.0 1 23 1642 1665 1642 1665 0.97 37 38 0.00054 0.037 14.6 0.3 2 23 1672 1693 1671 1693 0.96 38 38 1.8e-05 0.0013 19.2 0.3 1 23 1699 1721 1699 1721 0.98
Sequence Information
- Coding Sequence
- ATGCAATCGGACGAATGCTCTACTGCACTAACGGCGTCGCAGCGTCAATGTCTCCAAACATTATTTAACACTACCACTATCATTCCTTTTGAATTAAACAACGGTTTcgcttgttttttttgtgcaaAACCGGTATCTCAATATGATGATctcaaaaaacatacaaaatctCATGAAATATTCGATATAAGACAAGTTTCCAacgatttttattcaaaaataataaaggtaGATGTGTCTGATAGTAGTTGCGAAATTTGTGATATACAATCACATTCGAATATGGATTACAATTgcttaataaatcatttaacatCCGTTCATAATTTGAAAGATGATATtagttttgttaaatattttaatttaaaaagactaCAATGTTTGGAATGTACTCAGTGTTTTACAGAGTTATCTCAATTGGAAAtccacataaaaattaaacatgacAGTAACAAAAGTTCTGTACACGTTCTGCGTAAATTAGATTCAGGACCAGTTGTAAACAATTCGACAAAATACCACTTTTCTTGCCCtaaatgttcaaaaatattaacttcaaagttaggttttaaaatacatCTCACTAACTGTGGTGTTAAAAAAGAACCGCGgttattaaaagaaagaaatactagaacattaaaaattagGCAAAATATAGCGTCCGTTATTAAAATGTCAACTGCTATTCCTTTCAAATTCTTCAAAAATAAGTTTCGCtgtttttattgttcaaaAGATTTCacagattttgataatttaagaGATCACAATGTTAATGATCATCCTAATTTTAGTGAACATTGTAAAGCTATGAAGATGATTAAAGGTAGAGatgttaatgttaaaatagaCATTTCAAATCTCACTTGCAAACTTTGTTTTGAAAGTGCACTTGAATTAAATGACCTCataaatcatctaattttaaatcatgAAATAAATTACGATAAATCCGTACATTGTCTGCAACCTTATAGGAttgtaaaagataatattcCTTGTCCGATTTGCCCAAATACGGTGTTtcggtattttaaaaaacttttagaaCATATGAATGAGTTTCATTCGGATAACAATATTGTTTGCGCTCAATGCGGCTTAACATTTAGGGGCCACCCTAATTACCGCGCTCATATGTCCCGTTATCATAGAACTAAAGCTTGTAAATGTCCCGACTGTAACATGGAATTTTGGAATTTGGAAAAACTTGCTCGTCACAGGGCTAATATACATGatatAATACCATCAAAGGTGCCTAATTCTAATACATTGAGGCGGCGAAATCTTCTTATTTTGTTCAACAACACATCCATAATTCCTTTTAAGTATCGAGGGAAATGTAGGTGCTTTTATTGCGGAGAGGTATTGCCCGAATATGCTGATTTACGTAAACACACTAAAGCCCACGGTCCGTGCTTCGAAAACGATCGTGCTATACGATTAGTTAAAACTGATGACGCAGAAGTAAAAGttgatatatcaaatattgtcTGTGAAATATGCAACGAACCTTTTGCTACTTTTGATGAAATAATATCTCATTTGATTATAAAACACTCATTTTGTTACGACAAAGACGTCAAACTTACAATAATGACATACCGTCTTATAGATTTACAGTGTCTTTTATGCGATCAGAAGTTTAATCAAGTCAATGAATTAGTTGTACACGCTAATCATAAACATCCAATTCATACTCTAGATTGTGAAATTTGTCATCAAAAATTTATCAGAAAACCATATTTAGATGCTCACATGAGACTAAAACATAAGGATAACTACAACTGTTTAAAATGCTCCCAAATGTTTATATCGCACTCTGCTCTTCAGGAACATAAAAGCAAAGCGCATGTTGCTGTTTGTAACATTTGTTTTCTGAAATTCTCTTGTCAAAAGAAAAGATTAAAGCATATGAAGTTAGAGCACGCGAATGAACCGCTCAAATGTGGCTTCTGTCTCAAATATATGAACACAAAGTTAGGATTTTTAAGACACGCCGCTAAATGTACAGAACATGGAATGAATGGAgacgatatttatataatagacgATGACGATGACAAGAAACCAGCTGTAATTCAAATCAGAAATAATATTGCCTGCATACTTAACATGTCTACAGCTataccttttaaatattttatgaatagatTTAGATGTTTCTACTGCCCTAAAAATTTCACCGATTGTCAAGAGCTTAAAGAACACACAGTAATAGAACATCCCGTTTgtgatattgattttaaatgcaTGAGATTACGAAACAGACAGGAAGGGTgtgttaaaattgatatatcaACGCTTTCTTGCAAAAtgtgttataaaacaatatcgaATTTAGAGTCTTTAATTGATCACTTGATATCTGAGCACAAAGTGTTTTACGATATATCCATAGACAGTAATATGCAATCTtacaagttaataaaaaataattatcccTGTCCAATTTGTAAGGAAGTTTATACACACTTCAGTACGCTATTGAGGCATATGGGCCAAATCCATAcggataataataatatttgtatgcaTTGTGGAAAATCATTTCGAAATTTGCCAAATTTAAGAGTACACATTTCCAACCATCATAAAACAACGGGCACGTATAAATGTAATCGATGTGACCAAGAATTTTCCTCGAACAAGTATTTGCAAACGCATTTGGGTCGCTTACACGCAGTCAAAGTATTTGAATGTCCGAAGTGTAAAGAAAAATTCACATCGAACTACACAATGCAAAGGCACATGATTAATATGCACAGTACGGGATATAAGTGCGCATACTGCGGTAAACTGTTCACCtccaattgttttatgttAGATCACGTGAAGCGCACTCACTTGAAAGAAAGAAATGTCGAGTGTCATATCTGCTATGAGAATTTCTTTGATATTCAATGTTTAAAAACTCATATGGTTAAGCACAACGGTGCGAGAAGCTTTCATTGTGATGTTTGtgaTGAAAACATCCCATCCAAGTTACATAGTGCCAATAGATTAAGAAggttaaatctaaaaatattatttaacaataccTCAATATTACCATTTAAATGGCGTGGTAAATACATGTGCTTTTACTGTGGGGAAACCCCAAAAACATATGAGAAGTTCGTAGTTCATACTGAAGAACATGGACAATGTTCAGAAAAAGATCGAGCATTACAGTTAATAAAGGCGGCAGATGTTGAAGTGAAAGTTGATACGTCTAATATACTATGTCGAGCACACGGCACTAAAATAGTGAAGTGCCACGAATGTAAAGAAAGATTTAAATCTACCTACGATATGCAAAGGCATAAAATAGAAACACATGGTTCTGGACACGAATGTTCTTATTGTCACAAATTATTCACTGGGAAGTCTGCAGTTAACAATCACATACATGAAGTCCCGTACGACGTCTGCCCCTCTAAGCGCAGACGAAAAAACTTGCAAACACTGTTCAACAACACAACAATAATACCTTTTAAATGGCGGGGGAGGTATATTTGCTTTTATTGCggtcaaaattataatgaataccAATCGTTCAGAAAACATACGAGAGCTCACGGTCTTTGTAGTACAAGTGATTATGCCTTGAAGCTTATTAAAGGAAGTCATATAGAAATTAAGATGGACGTTTCAGAGATAGCATGTGAAATTTGTTACCAGCCGTTAACTAGTATTGATGAAGTTATAGAacatttgataaataaacacGAGCTGGAATACGATAGAAGTATAGACATACCTATACAGGAGTATCAGCTTTCAGATTGTCGGTGTCGAATATGCGGTCAAGAATTTCCTTATTTTGGCTACTTAATACAACATACTAATATAGTCCATCCACAAAATACCGTTATTTGTGATAATTGTGgtgaaaaatttaacaaaaaacgaGATCTGGCCATTCATATGAGACGCTATCACCAAGAAGGTGGATACCCTTGTGATGAGTGTCCAGATTTTTTTGAATCCTGCACACTTTTAAGTAAAcataagaataattttcacTTAAGAAGATGCAAAATATGTGATTTACGCTTTCCGTCCTACGCTCTTTTAAGGAGACATATAAAATGTGATCATTCTGATGATAACTGTCCGTATTGctcaaaaaaatgtcaaactTCTCAAGGACTTAAACAGCACATTACAAAGTGCAGTAAAAGATGTcatgtaaaagtaaaacaagCCTTCGATGAAGAAATAATACAACCTAACAAGAAAAAGAATGTTAACcaaataaggaaaaatatactGTGTGTTCTGAATATGTCTACTGCAGTACCTTTTAAGTTTTTCACGAAATATTCTTGCTTTTACTGTTCTAAAAGTTATGTGGAATTCGATGACCTCAAACAACATGTAATAGCAGTGCATCCAACTTGTGAtctgaaacaaaaatgtatgaaaaattgtaaaggGGAAAGAATATCGGTTAAAGTCGATATATCGTCGTTATCGTGTAGAGTGTGCTTTGAATCCATAGATAATATAGATTCTTTAATAGACCATCTTATTACTAAGCATGGAGCTGAATACGATAAAGCAACAACCGGATGTTTcgaatcatttaaaatagtcAAAGATAATATTCCTTGTCCAATATGTTCTActgtttttagatattttgggTCCCTTCTAAGGCATATCAATTCTGAACATAGTAATAATAACAGAATTTGTGATTTTTGCGGTCGTAGCTTCAAAAACGTGGCTAATTTAAAGGTGCATATAACTTATGCGCATACCGGTTCGTGCGAGTGTGACGTTTGCGgcgtaaagtataaaaatcaatGGTGCTTAGGTCGACATAAAGCGAAATCTCACAACGCTAAAGATTTCCAATGTACGAAATGTTCAGAGCGGTTCCAATCACAAtatcataaacaaaaacatctaATTAAAGTCCATGATATAGGTCATAAATGTTCGTACTGTGGAAAAATGTTCACGCGAAATTCTTTTATGAAAGACCACATACGTAGGACTCACTTGAAAGAGAAAAATGTGCCCTGTACAGTCTGTAATGAAAagttttttgataattatctACTTAGGCTTCATATGGTAAAGCATAAAGGCGAAAGAAAGTTCACTTGTGAGATATGTGGTAAAGCGTTTTTGAGGCGCAGTAATTTAAGCGCTCACACAgaaatgcataaaaaatatggccATGTTTAa
- Protein Sequence
- MQSDECSTALTASQRQCLQTLFNTTTIIPFELNNGFACFFCAKPVSQYDDLKKHTKSHEIFDIRQVSNDFYSKIIKVDVSDSSCEICDIQSHSNMDYNCLINHLTSVHNLKDDISFVKYFNLKRLQCLECTQCFTELSQLEIHIKIKHDSNKSSVHVLRKLDSGPVVNNSTKYHFSCPKCSKILTSKLGFKIHLTNCGVKKEPRLLKERNTRTLKIRQNIASVIKMSTAIPFKFFKNKFRCFYCSKDFTDFDNLRDHNVNDHPNFSEHCKAMKMIKGRDVNVKIDISNLTCKLCFESALELNDLINHLILNHEINYDKSVHCLQPYRIVKDNIPCPICPNTVFRYFKKLLEHMNEFHSDNNIVCAQCGLTFRGHPNYRAHMSRYHRTKACKCPDCNMEFWNLEKLARHRANIHDIIPSKVPNSNTLRRRNLLILFNNTSIIPFKYRGKCRCFYCGEVLPEYADLRKHTKAHGPCFENDRAIRLVKTDDAEVKVDISNIVCEICNEPFATFDEIISHLIIKHSFCYDKDVKLTIMTYRLIDLQCLLCDQKFNQVNELVVHANHKHPIHTLDCEICHQKFIRKPYLDAHMRLKHKDNYNCLKCSQMFISHSALQEHKSKAHVAVCNICFLKFSCQKKRLKHMKLEHANEPLKCGFCLKYMNTKLGFLRHAAKCTEHGMNGDDIYIIDDDDDKKPAVIQIRNNIACILNMSTAIPFKYFMNRFRCFYCPKNFTDCQELKEHTVIEHPVCDIDFKCMRLRNRQEGCVKIDISTLSCKMCYKTISNLESLIDHLISEHKVFYDISIDSNMQSYKLIKNNYPCPICKEVYTHFSTLLRHMGQIHTDNNNICMHCGKSFRNLPNLRVHISNHHKTTGTYKCNRCDQEFSSNKYLQTHLGRLHAVKVFECPKCKEKFTSNYTMQRHMINMHSTGYKCAYCGKLFTSNCFMLDHVKRTHLKERNVECHICYENFFDIQCLKTHMVKHNGARSFHCDVCDENIPSKLHSANRLRRLNLKILFNNTSILPFKWRGKYMCFYCGETPKTYEKFVVHTEEHGQCSEKDRALQLIKAADVEVKVDTSNILCRAHGTKIVKCHECKERFKSTYDMQRHKIETHGSGHECSYCHKLFTGKSAVNNHIHEVPYDVCPSKRRRKNLQTLFNNTTIIPFKWRGRYICFYCGQNYNEYQSFRKHTRAHGLCSTSDYALKLIKGSHIEIKMDVSEIACEICYQPLTSIDEVIEHLINKHELEYDRSIDIPIQEYQLSDCRCRICGQEFPYFGYLIQHTNIVHPQNTVICDNCGEKFNKKRDLAIHMRRYHQEGGYPCDECPDFFESCTLLSKHKNNFHLRRCKICDLRFPSYALLRRHIKCDHSDDNCPYCSKKCQTSQGLKQHITKCSKRCHVKVKQAFDEEIIQPNKKKNVNQIRKNILCVLNMSTAVPFKFFTKYSCFYCSKSYVEFDDLKQHVIAVHPTCDLKQKCMKNCKGERISVKVDISSLSCRVCFESIDNIDSLIDHLITKHGAEYDKATTGCFESFKIVKDNIPCPICSTVFRYFGSLLRHINSEHSNNNRICDFCGRSFKNVANLKVHITYAHTGSCECDVCGVKYKNQWCLGRHKAKSHNAKDFQCTKCSERFQSQYHKQKHLIKVHDIGHKCSYCGKMFTRNSFMKDHIRRTHLKEKNVPCTVCNEKFFDNYLLRLHMVKHKGERKFTCEICGKAFLRRSNLSAHTEMHKKYGHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -