Hnat000865.1
Basic Information
- Insect
- Heliconius nattereri
- Gene Symbol
- -
- Assembly
- GCA_013403645.1
- Location
- JAAIXI010000226.1:11898914-11899561[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.7e-12 2.3e-08 33.7 0.0 1 41 18 58 18 61 0.93 2 2 2.6 6.2e+03 -2.9 0.2 15 23 125 132 125 133 0.80
Sequence Information
- Coding Sequence
- atGCCACGAAAGAACTTGACACCCATttcgaataaaaaaaggaagacCTGGGATcctgaaaaaatgaaaagagcGATTGAAGCCGTCCGAAATAAAACTATTGGTTACAAAACAGCAGTCAAAGAATTTGATGTACCGAAATCTACTTTAAAACGGCTAGTAAAAGATACCGAACAATCTTTGGATATGATAGTGAATAAACCACTCGGAAGAAAACCTATCCTGTCAACTGTTTTGGAGAAACGtttactgaaatatattttattcatggaGGCCAGGTTTTATGGGTTAACTAGACAAGATGCAGGCAGAGCTTGGTTAGACCATTTTTTGGATAGACACAAAGACGAATTATCTCTGCGTAAGCCAATAGGTACGTCACAAGCTCGTGCCCAAGGATTCAACAAAGACGCGGTCCAAGAGTTTTATGCTATTGTAGAAGCCGAAATGACAAAAGTCCGCTACCCTCCAGATCGCATATGCAATGTCGATGAAACTGGACTGACGATAGTTCAAACCAAAATTCCACAAGTCATtggaaaaaaaggaaaacgaCAAATCGGAGCATTGACAGCAGCTTAA
- Protein Sequence
- MPRKNLTPISNKKRKTWDPEKMKRAIEAVRNKTIGYKTAVKEFDVPKSTLKRLVKDTEQSLDMIVNKPLGRKPILSTVLEKRLLKYILFMEARFYGLTRQDAGRAWLDHFLDRHKDELSLRKPIGTSQARAQGFNKDAVQEFYAIVEAEMTKVRYPPDRICNVDETGLTIVQTKIPQVIGKKGKRQIGALTAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -