Basic Information

Insect: Heliconius melpomene
Gene Symbol: -
Assembly: None
Location: Hmel208001o:8982012-8984738[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.11 7.5 7.3 1.9 1 23 139 161 139 161 0.96

2 14 8.6 6e+02 1.4 0.1 6 23 173 191 173 191 0.94

3 14 0.032 2.2 9.0 0.2 3 23 202 223 201 223 0.93

4 14 2.6e-07 1.8e-05 25.0 0.3 2 23 248 269 248 269 0.97

5 14 7.9e-05 0.0055 17.2 2.7 1 23 276 299 276 299 0.95

6 14 0.0017 0.12 13.0 0.0 1 23 305 327 305 327 0.97

7 14 3e-05 0.0021 18.5 2.6 1 23 333 355 333 355 0.97

8 14 0.0013 0.089 13.4 0.5 1 23 493 515 493 515 0.97

9 14 0.00046 0.032 14.8 0.7 2 23 522 544 521 544 0.90

10 14 0.0015 0.11 13.1 0.6 3 23 552 572 551 572 0.97

11 14 9.3e-05 0.0065 17.0 0.4 1 23 578 600 578 600 0.98

12 14 0.006 0.42 11.3 0.1 1 23 606 628 606 628 0.94

13 14 0.0043 0.3 11.7 0.3 1 23 634 656 634 656 0.92

14 14 0.33 23 5.8 2.2 1 19 662 680 662 685 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.11	7.5	7.3	1.9	1	23	139	161	139	161	0.96
2	14	8.6	6e+02	1.4	0.1	6	23	173	191	173	191	0.94
3	14	0.032	2.2	9.0	0.2	3	23	202	223	201	223	0.93
4	14	2.6e-07	1.8e-05	25.0	0.3	2	23	248	269	248	269	0.97
5	14	7.9e-05	0.0055	17.2	2.7	1	23	276	299	276	299	0.95
6	14	0.0017	0.12	13.0	0.0	1	23	305	327	305	327	0.97
7	14	3e-05	0.0021	18.5	2.6	1	23	333	355	333	355	0.97
8	14	0.0013	0.089	13.4	0.5	1	23	493	515	493	515	0.97
9	14	0.00046	0.032	14.8	0.7	2	23	522	544	521	544	0.90
10	14	0.0015	0.11	13.1	0.6	3	23	552	572	551	572	0.97
11	14	9.3e-05	0.0065	17.0	0.4	1	23	578	600	578	600	0.98
12	14	0.006	0.42	11.3	0.1	1	23	606	628	606	628	0.94
13	14	0.0043	0.3	11.7	0.3	1	23	634	656	634	656	0.92
14	14	0.33	23	5.8	2.2	1	19	662	680	662	685	0.88

Sequence Information

Coding Sequence: ATGGTTACGGTGAAATATCTAATTATGACAAATTTCTATTGTTTTCAGAAGGAAACAGTGCCGATCATAGAAAACTACGCCTTTATTCGAGAAGATGACCATGGCGTGTCGTCAGATCCACATTTACTTTCTGCGATTATCAAAAGCATGTTGACTGACGACTATTTTAAAATGTTGGACATTGATAAGGAAGGCTCAAATGTAGAATATGTCTGCCAAATATGCCCGGAAAAGCCGGCTTCGAGAACTATCGACAATTTGTGCTACCATTTAACTTGTTCACATCCTACTTATATAATTAATAAGCAATTCATAGAAAAATTTATAAAAGAAAATATAACTTTTGAAGAAATATTAGATGATAGCTTAATTGATGAAGATCCAGAACTAAGAAAAACTATACAATTACCAAATTACTTTTGTCCGTTTTGTGATAGTGCTTTTTCGTCGCCAACTCGTCTTGTGTGTCACTTAAACAAGCATATAGAAGTGAACTTAGATGACGGACTGACATGTTGTGATAATTATTACCCCAATAAGAAGTCCTTCGTGGGCCACTTGCAAACAGCTCACGTCGTCAAAAATGTAGATGGCAAAGAAATATGTAAAAGTTGCGATTTTGCCACAAGTGATACAAATAACTTACAATTACATATAAGTGAAGCTCATCCGGAAAGTAAAATTTATAATGGAAAGGACAAGAAAGACCCAAGTCCTAAAAATCAGAAATTCATCCCAGCAGTGTGCCCCGAATGTGATAAAGTTTTTTCTAACAAATATAACATGCTGGTTCATATGAAGAATCATAGTAAGTCATCCGTTAAATTTGCATGTGAAAAATGTAACAGAACATACAAAAGTCAAGGAAACTTGTCTCATCACAAGAAATTAGCACACGAGGGTCTACTTCCGTTTCCGTGTCCTCTTTGCGGGGAAGCGTTTCCATCCAAAATGGCGCGCGACGTGCACACGCGGATACACACCGGCAGCAAGCCGTTCTGTTGTCAACTCTGCGACAAGAGTTTCCGAGCCAAAAATAGCCTGGAGAGACACATAGACATGCACTTAGATATCAGAAAATGGTCACCCTACTCGGACCAAGATGAAATGTACGGAAGTGCCATTGAGCAGATAGTAGTCGGAACGGCTGCCGAGTTTTATACTGAACCTAGTTCGTCCGACGACGAACCTCTGGCCACCATGGCAAGCAAGAATAAAACAGATCTATATAAAAAATTTTATATCGCCTTAAAACATTTCCGAGACCATTTCGCGAGCGACCATCACGGACAGGTTAGTCATTCGGACTTTTCCGATTCCACCGATTCTGAATATAACGAAGTCGACAACGCGCAGGAGACGGACCTGAAGTACTACGACGACCTCACGGACCACAATGCCGGCACGCATGGCGCCGACGACGTCAGCCGCGAGGAACTGCACGCCGCGCGCCGCCGCGTTGACGGCAAGCTGCGCTACGACTGCCGCCAATGCGGACGCAGCCTCGCCTCCGCGCACTCGCTCCTCTACCACGCGCGCATCCACTCCGGCGCGCGCCCCTGCGTGTGCCACCTCTGCGGCAAGCAGTTCCGCGCGCCTGGCGGCCTCGCGCGCCACCTCGCCGACACGCATCGCGCCGCCTCCGCCCGCGCTTGCGCCCTCTGCCGCCGCTCCTTCGCAAGCGCACACGGTCTGCGCCAGCACGCGCGCCTGCACTCCAGCGAGCGCCCGCACGTATGTCCGCAGTGCGCGCGCGCATTCGCCACCCGCGCCGGCTTGCACGCGCACGCCCGGACGCACGCTGCGCGACGCCCGCACGCCTGCGCGCTTTGCGGCGCCGCCTTCCGCCTGCGCGCCGCTCTCGCGCGCCACCGCCTCGCACACTCAGGCGAGCGCCCGCACGCGTGTGCGCTTTGCCCGCGCGCCTTCCGCTCGCGCCACGAGCTGGGCGCGCACGCGCTGGCGCACTCGGGCGCGCGCCCGCATCCCTGCTTGCTGTGCTCCGCCGCCTTCCGCCAGCGCCGCGCGCTGCGCCTGCACTGCTCGCGCATGCACCCCGACCACGCAATAAATCATTCCAACTGA
Protein Sequence: MVTVKYLIMTNFYCFQKETVPIIENYAFIREDDHGVSSDPHLLSAIIKSMLTDDYFKMLDIDKEGSNVEYVCQICPEKPASRTIDNLCYHLTCSHPTYIINKQFIEKFIKENITFEEILDDSLIDEDPELRKTIQLPNYFCPFCDSAFSSPTRLVCHLNKHIEVNLDDGLTCCDNYYPNKKSFVGHLQTAHVVKNVDGKEICKSCDFATSDTNNLQLHISEAHPESKIYNGKDKKDPSPKNQKFIPAVCPECDKVFSNKYNMLVHMKNHSKSSVKFACEKCNRTYKSQGNLSHHKKLAHEGLLPFPCPLCGEAFPSKMARDVHTRIHTGSKPFCCQLCDKSFRAKNSLERHIDMHLDIRKWSPYSDQDEMYGSAIEQIVVGTAAEFYTEPSSSDDEPLATMASKNKTDLYKKFYIALKHFRDHFASDHHGQVSHSDFSDSTDSEYNEVDNAQETDLKYYDDLTDHNAGTHGADDVSREELHAARRRVDGKLRYDCRQCGRSLASAHSLLYHARIHSGARPCVCHLCGKQFRAPGGLARHLADTHRAASARACALCRRSFASAHGLRQHARLHSSERPHVCPQCARAFATRAGLHAHARTHAARRPHACALCGAAFRLRAALARHRLAHSGERPHACALCPRAFRSRHELGAHALAHSGARPHPCLLCSAAFRQRRALRLHCSRMHPDHAINHSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00782869;
90% Identity: iTF_00781207;
80% Identity: -