Hmel015180.1
Basic Information
- Insect
- Heliconius melpomene
- Gene Symbol
- -
- Assembly
- None
- Location
- Hmel201001o:4584457-4587372[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0014 0.1 13.2 4.1 1 23 151 174 151 174 0.98 2 17 0.00011 0.0075 16.8 2.1 1 23 183 206 183 206 0.97 3 17 0.016 1.1 9.9 0.5 2 23 219 241 219 241 0.97 4 17 0.00029 0.02 15.4 1.4 1 23 250 273 250 273 0.97 5 17 3.1e-05 0.0022 18.5 1.3 1 23 285 308 285 308 0.97 6 17 1e-05 0.0007 20.0 0.7 2 23 336 358 335 358 0.97 7 17 0.00033 0.023 15.3 1.3 2 23 368 390 367 390 0.96 8 17 0.015 1.1 10.0 1.0 2 19 395 412 394 415 0.92 9 17 0.0013 0.093 13.3 3.5 2 21 420 439 419 442 0.94 10 17 0.0092 0.64 10.7 1.3 2 23 451 473 450 473 0.94 11 17 0.0015 0.1 13.2 2.9 1 23 478 501 478 501 0.96 12 17 8.5e-05 0.0059 17.1 0.5 2 23 512 534 511 534 0.96 13 17 0.00037 0.026 15.1 0.6 1 23 560 583 560 583 0.92 14 17 0.0014 0.099 13.3 0.9 2 23 617 638 616 638 0.97 15 17 1.2 86 4.0 0.5 3 23 646 668 644 668 0.91 16 17 0.012 0.84 10.3 0.2 1 23 704 726 704 726 0.97 17 17 0.15 10 6.9 2.0 1 23 732 755 732 755 0.96
Sequence Information
- Coding Sequence
- ATGAATATTAACAATGTTAAAGCAGATAAAGATGATGATAGTAGAAAGGACCCAACTTCATTCCTTCCTGACGAACCTATGACATATGAAATAAAGACAAAGAAGAAGAAAAAAAAGAAAAAACAAGAGGATCCATTTAAAGATATTGAAGAAAAAACTACATTGCCCATAACAACAGTATTTGAATCTACAACAGAAAGTGAAGTGAATACGAAGCAACTATTGGACCCAGAAGTTAATATAAAAGTGGAAAACATTGAAGTTGAACTGGATTTCAATGATTTTGCAAACGACAATGGATTAATGTTAGAAGGTCCACAAAGTGAAGACAGTCAAGAACCAGTAGTTAAAATCGAAGAACAAAATCGTGAAGCAGTGTTACTTACATTCGAAAGCATTATAAGTGATAAAAGTGTTATAGGTTTCGGACCTATCGCGCCAGCGCCCAACTACGTCTGCAAAGTTTGCCATTTGGTGTTTCAATCAACGAAAACATTAAGAATGCATCAAAAAAGAAAACACAAAGTGTTTCGGAAATCCTTTAAATATATATGCCATTATTGCTCTATGTCATATGAACAGAAGAATAGTTTGGTTGCCCATATAAAAAGAAAACATGGGCCTGATTCATCGAACGATGATGGTGAAGAAAGAACATGTGAAATTTGTGCTTTAGTTTTCAAAGGAATTACCAGATTAAGAATGCATATGCGGAGAAAGCATGGTTCTTTTGAAGATTCTTTCAAGCATGTATGCAAAGATTGCGGCTTAACCTATGATAAATATAGAAGTCTAATTGTTCACATACAAAGGAAGCATTCAATTGATAAAAAACCGGTGCTAGACCAGTGGTACAATTGTCCGTTTTGCCCAAAAGTTTTTACGAAAAGAGAAACTTATGCAAGACATGTGCAAAGAAAACATCGTGTTAACGATGAAGATGAAGTCAAAGCAGAATCGGGAAGTTTACTCGAAAACATTAAAAATGAAACTACAGGTGAAATAACTTGTAAAGAGTGTCCATTAGTGTTTTCATCGCTCAATTACTTAAAACTACATATGAGGAGAAAGCATAATGCCCTAAAAGAAGATTTTCGTCTGAAATGTCGAATTTGCAACCTGTCATATGATAAAATTGAAAGTTTAAAACGGCATATACGACGGAAACACGACAAGGGGTCGTATTGTGACGTCTGCGATAAACAATTCGAAACTAGAGAAAGTTATCTAAATCATAGTCATAGGAGAATGGTCCAAGAGTGCCATATTTGCGGTCTCATATTCGCTTCACAAGGCGGTTTGTGTAAACATTTAAGATGTACACACAAAATACAGTCCCCCAAAACTATTGTGTGCAATCTGTGCAATGAAACATTTCACGATAAACGACAATTAAAGCCACATTACTTAAAAGTCCATTTAAAAGTGTCATACACATGCGCCTTTTGCCACAAAATTTTTAAAGCTAAAGAAAGTTATAGAAGACACGTTTTAATAAAACATCCGTCAAATACTACGAAACTTAACGAACAACAATGTGATAAATGTCCAGAGAAGTTTCCAGATGAATTTGAATTATGCCGCCATATTAACATAGCACACGGGATAATTCAAAATGGTGAAACAGGAAATGAATTATTGGAAATAAAAAAAGAGGAAGCAGACATTTCAGATACGTTCCAATGTTCAAAATGTCCGGAAAATTATAACAACTGGGATGAATTGAAGTTGCATTTCGAACAAAATCACTTAATGGTAGCAGTGACACAGTGCCAAGTTTGTGGTGAAATGGTTCCTGGAAACGAGCTAGATAAGCATTTTAAAAACTTTCACACAATAACTTCAGTACAATGCAAATATTGTGAATTCGAAACGTCCAATCGTGCTAGTATGACACAGCACATGTTGCGACACAAAAATGCACACACATTAAATTGCGATTTTCCCGGTTGTCGATACAAAACATATTATGAAGGTGCTATGGAGAAACACAAGAGAAAGCACAGAGATCAAGGTGTTAAGTTACAATGTACGCAGTGTCCTTTCCAAACAATGAATAAGTATATACTTAAATATCATGAAGAAGCCCATGTAACAGGAAAAAAGAGATATTCCTGTGATCAGTGCGATTATGCCACTATACTCCCAGCTAATTTAGTTCAGCACAAATATAAACATTCGTCAGAAAAGAGATTTAAATGTGAAGTCTGTCCGTTCGCAACTAAGTACAACACGTCGTTACGTTTCCACGTTAAAAAGAAACACTGTGATCTCCCAACATTCAGTTAA
- Protein Sequence
- MNINNVKADKDDDSRKDPTSFLPDEPMTYEIKTKKKKKKKKQEDPFKDIEEKTTLPITTVFESTTESEVNTKQLLDPEVNIKVENIEVELDFNDFANDNGLMLEGPQSEDSQEPVVKIEEQNREAVLLTFESIISDKSVIGFGPIAPAPNYVCKVCHLVFQSTKTLRMHQKRKHKVFRKSFKYICHYCSMSYEQKNSLVAHIKRKHGPDSSNDDGEERTCEICALVFKGITRLRMHMRRKHGSFEDSFKHVCKDCGLTYDKYRSLIVHIQRKHSIDKKPVLDQWYNCPFCPKVFTKRETYARHVQRKHRVNDEDEVKAESGSLLENIKNETTGEITCKECPLVFSSLNYLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHIRRKHDKGSYCDVCDKQFETRESYLNHSHRRMVQECHICGLIFASQGGLCKHLRCTHKIQSPKTIVCNLCNETFHDKRQLKPHYLKVHLKVSYTCAFCHKIFKAKESYRRHVLIKHPSNTTKLNEQQCDKCPEKFPDEFELCRHINIAHGIIQNGETGNELLEIKKEEADISDTFQCSKCPENYNNWDELKLHFEQNHLMVAVTQCQVCGEMVPGNELDKHFKNFHTITSVQCKYCEFETSNRASMTQHMLRHKNAHTLNCDFPGCRYKTYYEGAMEKHKRKHRDQGVKLQCTQCPFQTMNKYILKYHEEAHVTGKKRYSCDQCDYATILPANLVQHKYKHSSEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01033959;
- 90% Identity
- iTF_00457407;
- 80% Identity
- -