Hhim003733.1
Basic Information
- Insect
- Heliconius himera
- Gene Symbol
- -
- Assembly
- GCA_013421065.1
- Location
- JAATLT010016810.1:63193-80411[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.1 83 4.1 3.4 1 23 268 290 268 290 0.96 2 14 0.28 22 6.0 1.0 1 19 340 358 340 361 0.84 3 14 0.35 27 5.7 0.0 2 23 380 402 380 402 0.92 4 14 1.4 1.1e+02 3.8 2.0 1 19 439 457 439 458 0.91 5 14 6.7 5.2e+02 1.6 1.1 1 13 465 477 465 487 0.75 6 14 5.2 4e+02 2.0 5.3 1 23 785 807 785 807 0.88 7 14 2 1.5e+02 3.3 0.3 1 23 858 879 858 883 0.74 8 14 0.0034 0.26 12.0 4.5 3 23 921 941 920 941 0.96 9 14 0.0077 0.59 10.9 0.3 2 23 957 978 956 978 0.96 10 14 1.5e-07 1.2e-05 25.7 2.0 1 23 984 1006 984 1006 0.99 11 14 9.3e-05 0.0071 16.9 1.8 2 23 1012 1033 1011 1033 0.95 12 14 2.2e-05 0.0017 18.9 1.0 2 22 1040 1060 1039 1060 0.95 13 14 2 1.6e+02 3.3 0.0 1 20 1065 1084 1065 1084 0.82 14 14 4.8e-05 0.0037 17.8 0.2 3 23 1097 1118 1096 1118 0.95
Sequence Information
- Coding Sequence
- atggataaaaataataagaaacgaAGTAGAAAATCTAAATTAGTGCCGCGCAAGTATTCAGATTCGGATGATGAGAATATTGCTCTTATGCAGcaAGAAATTGAACTTGAGCTGGCAAACATAAAAGCTCAGTCAATACTAAAGAAACTGAGTGCGAGTAGTTTGAACAATGAAaaagattttcaattttcagtCAAAGTTGAAATTGAGAattgtgatgatgatgatgaaaattATGATGAACACAATGATTCATTGCCAAATGAAGAGAAaggcacaaaaaaaaatgattgttcACTagttaatgattttatttctattaagacaGAGAAATCTGATGCAGTAGCAGGTACAAATAAACAGAAAGAAACAGAAGATGAAGATTGCTCTATACAAAAAGGAGaaggaataaatatttcagatgTTGAAGAGAGTTCTTTgataaaagatgaaaaaaaaactattggtTCTGATCATGATGATGATAATGGTGAACTGCTCACTCCAATAAAAGAATCTGATTTTAGAGTAGAATCGGTTAGATCGGTTAGAACTAAATCTACCAAAACGATACTTACCTACAGAATACCAGACAAAATGATTCGcaatgaatttgaatttgtttgTAAACAAACAACTCGTTATGCTGACAAATTATTAGAAATGCGCCTAAGGAATTATTATGCTAAGGATACAGGTGTTTTGAATAATTGCGAAATAGATTTAGGTATCCAAGAAGCTTTAAAGAGATGGAAAATGTGGCAGTCTGCCTTTCCTACAGTTCGTGGGCCGCCATTAATGTATATATGCAGCAAATGCAAGTTGGGATTTTGGCATTTGCATGACTTTCGGGAACACCTCCAAGACCATACGGACATAAATTTCTCGTTTGTTAACGAAGAACATTTGAGCTATGTTATAGGCCATCTTGGCAAAAAAGCAGATAAACAGTTCTTGAGTGTAGATTCGGACTGCTGGAGATGCGGCAAAGGATTTAAATGCCACAGCGATGTTATATTCAAATGCAACGGTTGTAACCGTTACTTCGAAACCTGCCTACTAATGTCTATACATGAGGGCACTTGCGAAGaacacaaatataagtttgcccAATCGGAGAATATGGATATGCAACGTAAATGCCCTGTCTGTCCATACAAATATTGGAGGGAAGAGGATATACAAAGACACTTGATAGGTCTACACACGGTTAGAAATGATGTTCCAATATTCTGGTCCACTAAGAAATGTAGGAAATGCGATCATATTGTCAATCAATCGATTTTGCACGAGTGTAGCGAAAAATCAGCAACCCACGCATGTATGTTTTGTTCTAGAAGGTTCCaaagtaaacataatattatggttCATTACTGGATTTCGCAAAGTAATTTTGAATGCCGAATTTGCAAGAAAATGTTGAAAAAGGAGTGCATGGAGCTGGAGCACTTGCTAAGTCATTCGGAAAGTTACACTTCAGTGTATAAGTGTTTAATCTGTAAAGATGGTCGGTATTTCATGGATAAGAAGTTAGAAAACCAACATAAATATAACGCTCACAAGAGGTTGACGAAATCTGTTTTTGAAAAGGTAATCGTGCCTAAGAGCttattaaagaaattgaaaaataataaaaagtttatccGAAAGGAAGTTTTGGatCTACCAAATTCAGATATTGAAATTGAAAGCAATAATGCTCTAAATGTCATCAATGAGAATATTGAGTTGTTGTTACCAACTGATACTGTATGTATCACTAAATCAGGCAAAAAACGCAAAACGGAAAGTATTGCCATTAAGAACCCTCCGCCTATCCCAAATAATATTGACGATTCGACgcccattaaaaatattaagcaagaAATCgacattgaaattaataatgataCTGAAACTAAATCtagtaaaagtaaaagaaaaattgaaattcCAATAGAAAACGATttggaaataaagaaaatggcggatttgattaatataaaagaagaaccagtcgattttcttGATATTGTCGCCGTAGGAATTGAAACAGATGAAGTTAATGAAGCTAATAATGATGATATGAATTTGTTCAATGAAGTTAATAatggattaaatttaaaatttgaagcaGAAGAAGTGGATTTTCCAATTAAATGTGAAGTAGAAGATGAACCAGATGAagcttattatgaaattattgaaaacaatacaaTGCAAACTGATTTTAGTATAAACGTTGTGGAAGAAGATGATAGTAgtaaaagCAATCCCGAtaaagtactaaaaaaatacgtagtCAACATAagcaaatatgaaaaatttggcGGCGAGAAATATATGAGAATGATACACAACGATAAACATACATACCGTTGCACGAAATGCAACTATCCATATCAGTCTTTCAAAAAGTACCTCCACCATTTTGTTCTGCACAAATACAACAAAATGGCGTGCCCTCAATGTCTTGTGGAATTCGCGAATATTGAACAGCTGTCTTGCCATGTTAACgcacacattaaaaataattatgtgtgTGTACATTCGATTCATAATGAGATTACGTCAGCGAATAGTATTAGAAAGTTTCAATGCACGATTTGTCAGGAGATTTTAGTTGTTTCCGAGTTTTTCGCGCATTGGGAGAAACACTTGATGGTGCACGGGAACGAGCAAGAGCGTGTTTCCGCGGTTGATTTGAACGGGAAGCCGTTTTTGAGGGAAATGATTgattaTATACAACAACCAGAAAAACACAGATTCGGATCTAAAATTTGCATGCAATGTAACAAAAAGTTTCAcagaaaaaatgattttaaaaggcACATCATACAACACCTCCTCAACGATGCCTATGTAGAACTAACGAACTATGGACATTTGAAGTGTCAGATATGTGGGGCTGGATTCCAAACTGGGGATAGGTACAAACGCCATCTAAGAGACCACGCGTCTCTCCCGGTATATAAATGCGAGATGTGCGACAAAGCCTTCAGCGACTCCTCAAACTTCACCAAACACAAGAAAGTGCACAATCTGTACGTGTTAATATGTGACATTTGTGGGAAAAAGTTCCAGAATAAAAAGTGTTTGATTAAACATTTAGAATTACACGAAACGATGGAACCGATTGAGTGTGAGAAATGTGACAAAAAATTTTACTCACAATCGGCGTACAAAAAACACTTGAGAAAGAGTAACACGACCTTCAGATGTCCGATTTGCAGAATGGTGTTAAACAGTATTAAAGAGAGATGGGATCACATGTGGGAGGTACATAAAAAAAGGAACTGTCAAGCGGACTGTCCGATATGCGGCGCCAGCTTCAGGAAGAAGACTGATGTGAAGAGACACATGGGGAAGGTGCACGGCGATGAGGCACTCGCCCACTACTACGGATAG
- Protein Sequence
- MDKNNKKRSRKSKLVPRKYSDSDDENIALMQQEIELELANIKAQSILKKLSASSLNNEKDFQFSVKVEIENCDDDDENYDEHNDSLPNEEKGTKKNDCSLVNDFISIKTEKSDAVAGTNKQKETEDEDCSIQKGEGINISDVEESSLIKDEKKTIGSDHDDDNGELLTPIKESDFRVESVRSVRTKSTKTILTYRIPDKMIRNEFEFVCKQTTRYADKLLEMRLRNYYAKDTGVLNNCEIDLGIQEALKRWKMWQSAFPTVRGPPLMYICSKCKLGFWHLHDFREHLQDHTDINFSFVNEEHLSYVIGHLGKKADKQFLSVDSDCWRCGKGFKCHSDVIFKCNGCNRYFETCLLMSIHEGTCEEHKYKFAQSENMDMQRKCPVCPYKYWREEDIQRHLIGLHTVRNDVPIFWSTKKCRKCDHIVNQSILHECSEKSATHACMFCSRRFQSKHNIMVHYWISQSNFECRICKKMLKKECMELEHLLSHSESYTSVYKCLICKDGRYFMDKKLENQHKYNAHKRLTKSVFEKVIVPKSLLKKLKNNKKFIRKEVLDLPNSDIEIESNNALNVINENIELLLPTDTVCITKSGKKRKTESIAIKNPPPIPNNIDDSTPIKNIKQEIDIEINNDTETKSSKSKRKIEIPIENDLEIKKMADLINIKEEPVDFLDIVAVGIETDEVNEANNDDMNLFNEVNNGLNLKFEAEEVDFPIKCEVEDEPDEAYYEIIENNTMQTDFSINVVEEDDSSKSNPDKVLKKYVVNISKYEKFGGEKYMRMIHNDKHTYRCTKCNYPYQSFKKYLHHFVLHKYNKMACPQCLVEFANIEQLSCHVNAHIKNNYVCVHSIHNEITSANSIRKFQCTICQEILVVSEFFAHWEKHLMVHGNEQERVSAVDLNGKPFLREMIDYIQQPEKHRFGSKICMQCNKKFHRKNDFKRHIIQHLLNDAYVELTNYGHLKCQICGAGFQTGDRYKRHLRDHASLPVYKCEMCDKAFSDSSNFTKHKKVHNLYVLICDICGKKFQNKKCLIKHLELHETMEPIECEKCDKKFYSQSAYKKHLRKSNTTFRCPICRMVLNSIKERWDHMWEVHKKRNCQADCPICGASFRKKTDVKRHMGKVHGDEALAHYYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -