Basic Information

Insect: Heliconius himera
Gene Symbol: -
Assembly: GCA_013421065.1
Location: JAATLT010017187.1:45947-56259[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.1e-06 8.3e-05 23.0 1.8 1 23 256 278 256 278 0.98

2 11 0.05 3.9 8.3 2.3 1 23 286 309 286 309 0.94

3 11 0.00018 0.014 16.0 2.2 1 23 403 425 403 425 0.99

4 11 6.2 4.8e+02 1.7 6.0 2 23 434 456 433 456 0.95

5 11 0.0076 0.58 10.9 1.8 1 23 460 482 460 482 0.97

6 11 0.00045 0.034 14.8 2.0 1 23 487 510 487 510 0.97

7 11 0.063 4.8 8.0 3.9 3 23 516 537 515 537 0.95

8 11 0.27 21 6.0 0.1 2 20 556 574 555 576 0.93

9 11 4.4e-06 0.00033 21.1 1.1 1 23 655 677 655 677 0.98

10 11 0.00024 0.019 15.6 1.0 1 23 683 705 683 705 0.96

11 11 3.5e-05 0.0027 18.2 2.4 1 23 711 734 711 734 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.1e-06	8.3e-05	23.0	1.8	1	23	256	278	256	278	0.98
2	11	0.05	3.9	8.3	2.3	1	23	286	309	286	309	0.94
3	11	0.00018	0.014	16.0	2.2	1	23	403	425	403	425	0.99
4	11	6.2	4.8e+02	1.7	6.0	2	23	434	456	433	456	0.95
5	11	0.0076	0.58	10.9	1.8	1	23	460	482	460	482	0.97
6	11	0.00045	0.034	14.8	2.0	1	23	487	510	487	510	0.97
7	11	0.063	4.8	8.0	3.9	3	23	516	537	515	537	0.95
8	11	0.27	21	6.0	0.1	2	20	556	574	555	576	0.93
9	11	4.4e-06	0.00033	21.1	1.1	1	23	655	677	655	677	0.98
10	11	0.00024	0.019	15.6	1.0	1	23	683	705	683	705	0.96
11	11	3.5e-05	0.0027	18.2	2.4	1	23	711	734	711	734	0.96

Sequence Information

Coding Sequence: ATGTTTGACATAAAAGCATGTACTGTATGcttaaaaacaaatgttaaaatttatagtttgaACACAGACCAACTGAGACATGAATATAATTTGGTATCGGGCTTAATGacctACAGCCAAAATGGTCTACCtgaatatttatgttatcaATGTATGGCTCATGTAAGAAATTTTAAGAAGTTCCGTGATAAATGTCAACACTCATACTATGCACTCAGAGAAGCATTTGATAGggataaaaaaatAACCCAAACTGTGGTTGAAGAGTTAAGTCACAACATAACAAATATAGAGCCAAGCCTCTCTTATTTGGCACTAGATCATTATAGAACAAAATATGAGTTTGTCAAGTCCAAAACAAAGAAACATAGACATAATGATTTAAAAGAATTTGATAACATACCCATATTTCAATTCACTACTACTTCTGAtgaagttttatttgaaataccCAAGAAAAAAACAAAGCTTTGGGTGGACTTAGAGCATAGTATAAAGCAAGAAGATGAATCTCTAACTAAACCTGATGAAACATTTGCTGAATCAACTGAATTGTATGAAAAGAAAGATGATGACTTCTATGATGATTTTGATGATTGTGATATACAAAATGATGAATTTGATAatgattttgaaacaaaattggATAATCAAGTTAATATAAATGGAGATAAATTAGAAGAGGAGTATGCTACATTAGTACCAATATCTACAAAAGAAGCTAAAGCAGCTGTTGAAGTATATAAAATGCTTTTCCAAGGAAAGTTTTCATGTGAAATTTGTCAAAAAACTTATAACAGTCAGTACAGATTGAAAGCTCATATGCGAATGCATGacatgtgTATTAGTGGCACTTTTTCGTGTTCCCTGTGCAAATTTTTCTACAGATCTGAACTGCTCTTAAAATCTCATATGACAGAAAAACATATGTACAAATACTTATGTAAGAAGTGCCCTGAGGTAAACTTTGATAGGCATTCAGCAAAACGACACTACTATTGGGGTCATTTCACAGAAATATCACAGAAACGTACCCGTTCATCTAGACTTACAAAAGGAAGACGAAAGCACAAATCTGCCATTAGACAATTAGAACCAAAGACTGGTGATCCAGAAGATTTTCCTATACTCTCTGCAGTCAGTCAAGAAGAACAATACGCTTTGATACGAGACAGACAAAAGACCAAGAATTATATAGATTCTCCATACAAATGTGAATATTGCTATAAAGGTTTTAGAGTTGCTACGACTTATGAAACGCATTTGAAGAAACATGATCCTgCAATCTCAGGAGAGCTCCAATGTGATACATGCAAGACTTACTGCCCTAACACAGCGAAAATGTATAAACACATGACCAGGTGTCACATATACAAGTATACCTGCCAAATGTGTGgatatgtttgttttaatagAGGTCAagcaaaaatacattataactgGCACAAAAAAGTCATCTACCCTTGTCCTCATTGCAAGAAAGAATTTTCgaaagaATCAACAAAATTGGGGCATATTCGTAAAATGCACCCATCTACAAATATATGTCATTTATGTGGACACAGCTTTGTTAGTGTCACCGGCCTTCATATACACAAACTGAAGACACATAGTAAAGAGGAAGTAGAAGAAAATCCAGGTAAAGTGGATCCCAATAATCCGTTGTACTGCGCAGAGTGTCGTGTACAGTTCCGTGATGAAGAAGCTTTTAACACTCATCTGGGCTCTTCTAATAAACACGCTGAGACTAATcgATCGATGATCCAAGCAAATATCGACAGCGCATATGACACAAAGGGCACGGGCGTGAGGGAGGGCCCGCGGCTCACCGACAAGGGGGTCGTCAACATGGGGCGCGCCACGTCTTCTAATTGCGAAATTTGCAACAAGTACCTGTTGAACGACACGCAGGCGACGCGCCACTACGACGCGGAGCACCCCGGCGCGCCCTACCTCAAGCGCTACATGTGCGACATCTGCGGGCATAAGACGCGCCAATACGCCAACCTAGTGGTGCACATGCGTACACACACTCAAGAAAAGCCGTACGCGTGTCCACACTGCGATAGACGATTCAGTATGCAGAACAATAGAGATCGACATATTGTTGTGCACACAGGTGAAAAACGCTACCTCTGCCCGCATTGCAATCGTCGTTTCTCACAAAAGAACACTGTCAAACTTCACATACAAactgtacatttaaaaataccatATCCACCGTGGAATAAAAAGAATAGGAAACGTCGAAATATTGACGTTGAACCTCCTTCCCCCCCACCTAACTATAAACTACCCCTGGAAGCCCCCCATGGGAACTATTTGAGTGCATACATTGATACTACTAACAAAGTGTGCGGCTCACATTAG
Protein Sequence: MFDIKACTVCLKTNVKIYSLNTDQLRHEYNLVSGLMTYSQNGLPEYLCYQCMAHVRNFKKFRDKCQHSYYALREAFDRDKKITQTVVEELSHNITNIEPSLSYLALDHYRTKYEFVKSKTKKHRHNDLKEFDNIPIFQFTTTSDEVLFEIPKKKTKLWVDLEHSIKQEDESLTKPDETFAESTELYEKKDDDFYDDFDDCDIQNDEFDNDFETKLDNQVNINGDKLEEEYATLVPISTKEAKAAVEVYKMLFQGKFSCEICQKTYNSQYRLKAHMRMHDMCISGTFSCSLCKFFYRSELLLKSHMTEKHMYKYLCKKCPEVNFDRHSAKRHYYWGHFTEISQKRTRSSRLTKGRRKHKSAIRQLEPKTGDPEDFPILSAVSQEEQYALIRDRQKTKNYIDSPYKCEYCYKGFRVATTYETHLKKHDPAISGELQCDTCKTYCPNTAKMYKHMTRCHIYKYTCQMCGYVCFNRGQAKIHYNWHKKVIYPCPHCKKEFSKESTKLGHIRKMHPSTNICHLCGHSFVSVTGLHIHKLKTHSKEEVEENPGKVDPNNPLYCAECRVQFRDEEAFNTHLGSSNKHAETNRSMIQANIDSAYDTKGTGVREGPRLTDKGVVNMGRATSSNCEICNKYLLNDTQATRHYDAEHPGAPYLKRYMCDICGHKTRQYANLVVHMRTHTQEKPYACPHCDRRFSMQNNRDRHIVVHTGEKRYLCPHCNRRFSQKNTVKLHIQTVHLKIPYPPWNKKNRKRRNIDVEPPSPPPNYKLPLEAPHGNYLSAYIDTTNKVCGSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00780543;
90% Identity: iTF_00775557;
80% Identity: -