Basic Information

Insect: Heliconius himera
Gene Symbol: -
Assembly: GCA_013421065.1
Location: JAATLT010024155.1:9632-13352[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2.2 1.7e+02 3.1 0.6 1 20 249 268 249 270 0.88

2 10 0.065 5 8.0 0.2 2 23 299 321 298 321 0.95

3 10 0.00053 0.04 14.5 0.2 1 23 344 366 344 366 0.98

4 10 0.00017 0.013 16.0 0.2 1 23 370 393 370 393 0.96

5 10 0.011 0.85 10.4 0.8 1 14 398 411 398 412 0.91

6 10 0.0057 0.44 11.3 1.1 2 23 428 450 427 450 0.91

7 10 0.00082 0.063 13.9 1.9 1 23 457 480 457 480 0.98

8 10 0.03 2.3 9.0 2.9 2 23 487 508 486 508 0.97

9 10 4e-06 0.0003 21.2 3.8 1 23 514 536 514 536 0.99

10 10 5.8e-05 0.0045 17.5 1.4 1 23 542 564 542 565 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2.2	1.7e+02	3.1	0.6	1	20	249	268	249	270	0.88
2	10	0.065	5	8.0	0.2	2	23	299	321	298	321	0.95
3	10	0.00053	0.04	14.5	0.2	1	23	344	366	344	366	0.98
4	10	0.00017	0.013	16.0	0.2	1	23	370	393	370	393	0.96
5	10	0.011	0.85	10.4	0.8	1	14	398	411	398	412	0.91
6	10	0.0057	0.44	11.3	1.1	2	23	428	450	427	450	0.91
7	10	0.00082	0.063	13.9	1.9	1	23	457	480	457	480	0.98
8	10	0.03	2.3	9.0	2.9	2	23	487	508	486	508	0.97
9	10	4e-06	0.0003	21.2	3.8	1	23	514	536	514	536	0.99
10	10	5.8e-05	0.0045	17.5	1.4	1	23	542	564	542	565	0.95

Sequence Information

Coding Sequence: atggaaaataatttgAACAGTACTCGCTTTGGTACATGCCGATTTTGCTTCAGCAAAGGAAATCATAGAGATATTATGAAAGAGTACAACTGGAACGGCGTACGCGAAGTTTATTTCGACGTGTTTCAAGAATGTttcaatttatatTTATGCACAAATGGAAGAAGTTCTCTTATATGTGCAGTGTGTATTGAAAAATTAAGAGATGCAAATAGCTTTCGAACATTGGTTGTTAATGCTGAAAGACAGTTATTAGACACATTAGATGAGAAACAGACATTTTTCATTAATTtaagggAACCATTAATGGATATTGATGTGAAAGTAGAAAAAGACACTGAATTCAAAAGGGAGGAAAGCAATTTagatgaaaattttaatgataatgaggatgatgatgatgatgacatgTTAGATAAATATGATGataaaatatcaaatactgATGATTTAGTAGATGGGGAAGCGGAACTTTTAGCAAGGTTCCCTCCTGGTACATTAAAACCATTGCCCACACGAAAAACCATGGAGTATACATGTAAACAGTTTGTTAAAGAATTGGAATTATTGAGAGgtaaaaaaataaaaggcagCTCAATAAAAAATCTAGTAACAGATACAACAATACCACAAAGAATAAGAAACAAAGTGTATATGACGGAAAAGCTAGCCCACATAGCAAACGTCACAACTATTCTAGAACATTCTAATCTAACCGCCTTCAAGACTAGACGACGATCTGGTTTTCCCTGCTTTTACTGCAGACGGATTTACGAAAACTTCGAAATTTTAAAGGATCATCAGTATAATGATAAATGCAAggctaatctaaaaaaaatgcttgCAAAGTCTATAATGGACCGACTAGTTGTATATGTTcatataacagaaataaaatgtactatatGCGATCAAATTCAAGCAAATTTAAACGAATTGAAGGCGCATTTGACGAAAACCCACAAGAAGAAGCTCCACCCTGAATATGGAGACAGGATTATACCATTCAAGCTGACGAAGACAAATGAATATGAGTGTCAAAGTTGTGGTTTTAATTTCGAAACTTTTGGTGCAATCGAGCGTCATATGAACGTTCATTACAGGAATTTCGTTTGTGATCAATGCGGTGCCGGTTACGTAACCCAAAGTCGATTAAAGGTGCATCTAAAATACTCCCACATACAGGGTGTGTTCCCTTGTGATATATGTAATAAAGTGTTCAATACACAATACAAACACAAGTGTCATGTCGATGCAGTGCATAAAATggtcaaaaaaaataagtgcCCAAAGTGCCCCGAACGATTTACGGATTACTTCGACCGTCATCAACATATGGTAGAGGCGCACGGAGAACAACCACTAAGATATCGCTGCAATGTTTGCATGTCCGTCTTCAAACGGCGTTACGCGCTATCTCTGCACATGAAACGACGTCATCTGGAAGTTAAGGAGAAAGAGTGTGATTTGTGTACATACAAGTGTCATACTATAGCCGAGTTGAAGGCTCATATGATCAAACATAATGGTGAAAGAATGTATGAGTGTTGTGTGTGTAAGAAATCGTACGCTAGGAAGAAAACTTTAAAAGAACACATGCGTATACATAATAATGATCGTAGGTTTGTCTGTGTGGTCTGCGGACAGGCATTTGTACAGAATTGTAGCCTAAAAGGCCATATGAAGGCTCATCATGCTGACTATAATATAGGGATAGGCAGGAGTTAG
Protein Sequence: MENNLNSTRFGTCRFCFSKGNHRDIMKEYNWNGVREVYFDVFQECFNLYLCTNGRSSLICAVCIEKLRDANSFRTLVVNAERQLLDTLDEKQTFFINLREPLMDIDVKVEKDTEFKREESNLDENFNDNEDDDDDDMLDKYDDKISNTDDLVDGEAELLARFPPGTLKPLPTRKTMEYTCKQFVKELELLRGKKIKGSSIKNLVTDTTIPQRIRNKVYMTEKLAHIANVTTILEHSNLTAFKTRRRSGFPCFYCRRIYENFEILKDHQYNDKCKANLKKMLAKSIMDRLVVYVHITEIKCTICDQIQANLNELKAHLTKTHKKKLHPEYGDRIIPFKLTKTNEYECQSCGFNFETFGAIERHMNVHYRNFVCDQCGAGYVTQSRLKVHLKYSHIQGVFPCDICNKVFNTQYKHKCHVDAVHKMVKKNKCPKCPERFTDYFDRHQHMVEAHGEQPLRYRCNVCMSVFKRRYALSLHMKRRHLEVKEKECDLCTYKCHTIAELKAHMIKHNGERMYECCVCKKSYARKKTLKEHMRIHNNDRRFVCVVCGQAFVQNCSLKGHMKAHHADYNIGIGRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01079334;
90% Identity: iTF_00775582;
80% Identity: -