Hhim001293.1
Basic Information
- Insect
- Heliconius himera
- Gene Symbol
- -
- Assembly
- GCA_013421065.1
- Location
- JAATLT010024278.1:15088-22178[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.1 7.9 7.3 1.3 1 23 306 328 306 328 0.98 2 10 5.6e-05 0.0043 17.6 0.9 1 23 335 357 335 357 0.97 3 10 5.3 4.1e+02 1.9 0.1 1 9 361 369 361 376 0.82 4 10 5.1e-05 0.0039 17.7 0.5 2 23 389 411 388 411 0.96 5 10 0.0013 0.098 13.3 0.6 1 23 420 442 420 442 0.96 6 10 0.00045 0.034 14.8 0.2 1 23 447 469 447 469 0.97 7 10 4.6 3.5e+02 2.1 0.1 6 22 480 496 479 500 0.92 8 10 2.7e-06 0.00021 21.7 0.3 1 23 505 528 505 528 0.98 9 10 1.3e-05 0.001 19.6 1.2 1 23 577 599 577 599 0.97 10 10 0.00021 0.016 15.8 0.9 2 21 609 628 609 629 0.94
Sequence Information
- Coding Sequence
- atgtcttcATTTTTGTGCTTCATTTGTCACAGTACTGTTAGTAAAGAGACGAATGAGGAGACTCGAGACAAATATCGCGAAGTGGTTGGcatgaattTATGTCCTGACTCACAGTTGTGTTACATCTGCTGTCATGTTTTGAACAAGCTTTCTCTCTTCAGATCCATTTGTTTGAAACGGAGCTTAGAATATCCTGTGttatttagaGAAAAAGGaactttaaatttacaaaagagtgatttagaattaaatgttttatgtcCAGAAGACTGCAATCAGTATCAAAGGAGCAAAATTTACCAATTCACTTATGACAATGATGCTAATGACACAAATGATAATAATGACAATGAATATGTTAAATTAGAACACGAAAATGATTATAACGATTATTTCACACAATGTCAatatcaaaatgttaaaaataatgatgaaatagaagaaaataattatcattgcaaaagtaaaaatgttaatCATTTTGATTTCACaccaaaaaattacataaatgaaGCTTTAGGTAATGAGAGTAATGACATACATGAATATTCTGAAGAAGAAAATGACGGTACTGACGCTCATGATTATTGTGAagtagaaaataatgaaaataacagACATTTAAATGGAAATGAACAAATCAttgaagatttaaatataaataataaaaatataaataatgaaacagAAACAGAGCGGAAGTTAGTTAATGATTATCCACAAAATgaagattttattgataaaaccaTGGAAATAGAtgagataaatgtaaataatgaagCAACTGATgtgttaaataagaaaaaagtaaaaaaaagaaagaagaaaggcTACAAGaagattattttaagtttagaaGAACAGAAGGCAGAACTAGAAGCAAATAGgaaaggaaagaaatatatagaatcagaatttaaatgttttaattgtgCTTTAGGATTTTTATTCAAAGATACTTATCAAGCTCACATGATGAGACATGAAGAGtcGAATGGCCAACACCAATGTGAAACATGTACACTACGTTTCTCCACACTTGCTTTGTTAAGAGCTCATATGGCTAATCATAAAGAGATATATATTTGCACCAAATGTGGATTGAACCTACGACCCAGAGCTCAGAGAGGGCATAACTGTACAATAAAAGAAGTCGAAACAGTCTCTTGTCATTTGTGTGGGAATTTGTTTAAAGACGCCAGCGGCCTGCAGCAGCACATAAGGCGCGTCCACACGCGCAAGTGCAGCGGCCGCCTGCACTCGTGCGGCGCGTGTGGAGACGGCTTCAGTACGCAACGAGCCCTGAGGACGCATATGATCAAGCACGTGTCGCACACGTTCGCGTGTTCGCAGTGCGGCGCTCAGTTCCGCAGCCCGTACTCGCGCGCGGCGCACGAGCGCACGCACGCGCGTGGCGGGCGGGCACACGCGTGCGCGTGCGGCGCGCTCTTCGCGTCCCGGAAGGGTCTAGTGGAGCATAGACGCAGGAGTGCCAGGCATCAGAGTGTTTTATTCGAATGTCCCATATGCGGTCGAATATGCCCCACACAACGTGCTCTTTCGTCACACATGCAGACAATACACGGGGGGCATGGAGTTACACTGGATACCGGCGTACAAGTGAACACCGGAGTACAATTGGACACTAGGGTACAATTGGATACTGGGGTACAAATGGACACAAGAGTACAAACAGAGAACGTGGTACAAGGGGTGCAAATACAAGCACACACTTGCCCCATGTGCCCCGCGCGTTATACTACAAGGAAGTCATTATTGAGGCACATTAGAGGTCACAGTGGGAAATCTGATGTCAAGATGGCGGTGTGTCATTTGTGTGGGAATAGTTTTAAGGGTAACAGTAAACTAAACAGACATTTGAAGGAAGTTTGTGAAAAAGCGAAACTTGAAGAAGAAATATCagcattatatgaataa
- Protein Sequence
- MSSFLCFICHSTVSKETNEETRDKYREVVGMNLCPDSQLCYICCHVLNKLSLFRSICLKRSLEYPVLFREKGTLNLQKSDLELNVLCPEDCNQYQRSKIYQFTYDNDANDTNDNNDNEYVKLEHENDYNDYFTQCQYQNVKNNDEIEENNYHCKSKNVNHFDFTPKNYINEALGNESNDIHEYSEEENDGTDAHDYCEVENNENNRHLNGNEQIIEDLNINNKNINNETETERKLVNDYPQNEDFIDKTMEIDEINVNNEATDVLNKKKVKKRKKKGYKKIILSLEEQKAELEANRKGKKYIESEFKCFNCALGFLFKDTYQAHMMRHEESNGQHQCETCTLRFSTLALLRAHMANHKEIYICTKCGLNLRPRAQRGHNCTIKEVETVSCHLCGNLFKDASGLQQHIRRVHTRKCSGRLHSCGACGDGFSTQRALRTHMIKHVSHTFACSQCGAQFRSPYSRAAHERTHARGGRAHACACGALFASRKGLVEHRRRSARHQSVLFECPICGRICPTQRALSSHMQTIHGGHGVTLDTGVQVNTGVQLDTRVQLDTGVQMDTRVQTENVVQGVQIQAHTCPMCPARYTTRKSLLRHIRGHSGKSDVKMAVCHLCGNSFKGNSKLNRHLKEVCEKAKLEEEISALYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00782899;
- 90% Identity
- iTF_00782899;
- 80% Identity
- -