Hhim010110.1
Basic Information
- Insect
- Heliconius himera
- Gene Symbol
- -
- Assembly
- GCA_013421065.1
- Location
- JAATLT010017187.1:34561-43925[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.3e-06 0.00018 21.9 1.0 1 23 258 280 258 280 0.99 2 13 0.024 1.9 9.3 2.7 1 23 288 311 288 311 0.95 3 13 0.65 50 4.8 0.4 1 23 315 338 315 338 0.90 4 13 0.00051 0.039 14.6 4.3 1 23 412 434 412 434 0.99 5 13 0.27 20 6.0 2.0 2 23 443 465 442 465 0.96 6 13 0.35 27 5.7 3.2 1 23 469 491 469 491 0.97 7 13 8.5e-05 0.0065 17.0 3.0 1 23 496 519 496 519 0.98 8 13 1.4 1e+02 3.8 1.9 3 22 525 544 524 546 0.78 9 13 0.033 2.5 8.9 0.1 2 20 565 583 564 585 0.93 10 13 0.14 11 6.9 0.2 2 23 628 650 627 650 0.90 11 13 8.8e-07 6.8e-05 23.3 1.4 1 23 659 681 659 681 0.98 12 13 0.0003 0.023 15.3 0.7 1 23 687 709 687 709 0.96 13 13 1.5e-05 0.0011 19.4 4.6 1 23 715 738 715 738 0.98
Sequence Information
- Coding Sequence
- ATGTTTGAATTAAAAGCATGTATAGTATGcttaaaaagtaatgtaaaaatttttagtATGAACACGGGTCAATTGAGAAAGGAATTTAATTTAGCATCAGGCTTAaagACTAATAGTCATAATGGACTTCCTGAATATTTATGCTATCAATGTGTAGCTCATGtaagaaatttcaaaaaatttagGGATAAATGCCAACGTACATATTACGCATTACAAGAAGTacttcataaaaataaagagATTACAAAATCTATAATTGAAGAAATAGACTCAAAAGCCCTTAAAATAGAGCCAACTTTGTCATATGTAACTCCAAATCATTTTAGAATTAAGTATGAAAGTGCAAAATTTAAATGGATAAAACAAAACAGACTAAGTACAAGAAATGAAGATGAAAtctcaatatttcattatacaaCTGCTTCCGATGACTTTGCATTTGAAGTTCCAAGAAAGAAATCTAAGCTATTAACAGAATTAGTACAAGAATGTATAAAGGTAGAAGAAGATAATGGAGAAAATGTACTTACAAACGAGCCTGAAAGTTTAGTTGAAAACAAAAATGCAGTTCTTGATAATGATAGTTTTGATACTGGTTTTGATATTTGTGATGAGGCAACTGATATTGACAATAATGAAGCCACATGTAAAGATGATCAAGAAGCAGATGGCATGAATTTAGATGAGGAATATGCTACAATTGTACCAATATCTATAGTAGAGGCTAAAGCTGTAGTagatgtatataaaatgtttgcCCATGGCAAGTTCCAGTGCTCAAAATGTGGGAAAGCTTACTATAATGAAAACCGTCTTAATGCGCACATGAGAATGCATgatacacaCACAAGTGGAACATATTTTTGTGAACtatgcaaatattattatagaacagactttttattaaaaactcatATGAATGAAAAACATATGTACAAGTATTTGTGCAAGAAATGTCCTGAAGTAAGTTTTGACAGgACGTCAGCTAAACAACATTATATATGGAGCCACATGCAAAAAGGTTCTAAGAAAGATGCTAATTGGTATGAATCTCAAAATTCTAGtgctaatgtaaataaaaatagtaaaaagaacaaattatttatacgtCCAATGAGAAATACTAAGAGGCTACCTCAGGACTTTCCAGTGTATTCACCGGTGAGTCAAGAGGAACAATATGCAATTGTCAAAGATAGACAGAAAACTAGAAACTATATTGATTCACCATATAAATGTGAACATTGCTATAAAGGTTTTAGGGAAGAAATTACATATCAAAATCATATGAAAAAACATGATCCTgcaCATTCTGGTAAACTACAATGTGATGCATGCAAAATATTCTGTCCAGATTCAAGGAAAATGTACAAACATATGAACATGAGTCATTTATTCAAGTATTCATGTCAAATGTGCAGTTATGTTTGTTTTAgcagaGGTCAAGCAAAAATGCATTATAAATGGCATAAAAATGTTACGTACTCGTGTCCACATTGCAAGAAGGAGTTTACTAAAGCATCAACAAGACTGACCCACATTCGAATCAAACACCCATCGACCAACATATGTAATTTGTGTGGACATAGCTTCGTCAGCGTCACTGGTTTATACTGCCATAAGAAACTGGCTCATACTGAACAgGAGGTGTCGGcgagcgcgggcgcggcggaccgCGCGCACCCGCTGTACTGCGCCGACTGCGACGTGCAGTTCCGCGACCACGCCGCGCTCGCCACGCACTACGGCTCCTCCAACAAACATGCGGATACTAATCTatctatAAAATCACTAAAAAAGGAAGGCACAGGCATACGTCGAGGACGTCCGCGACAAACAGAAAGTGGCATTGTCAATACTGGAGTACCCACGTCTTCTACTTGCGACATTTGTAACAAGTACCTGGCGAACGACTCGCAGGCGCGGCGCCACTACGACGCGGAGCACCCCGGCGCGCACTTCCTCAAGCGCTACATGTGCGACATCTGCGGGCACACCACCAGGCAATACGCCAACTTGACGGTGCACATGCGCACGCACACGCTGGAGAAGCCGTACGCGTGCCCGCACTGCGAGCGACGCTTCAGCATGCCCAGCAACCGAGACAGGCATCTTGTGgtACACACAGGCGAGAAACGCTACCAATGTCAACACTGCCATCGTCGTTTCACCCAAAGTAGCGCTGTCAAACTTCACATACAAACAGTTCATTTGAAAATACCTTACGCTCCGTGGGATAAGAAAAATCGTAAACGACGTCGAGACGCTGAAGCCCCCCTTTTGCCCACCGCCCCCCTCGCCCCCGTCCCTGCCACTGCCCCCCTTACGCAAGCTCCTCCTTCTGGTACAGGACATAAGTTGTTATTAGACACAACTCATGGGAATTATCTTAGTgcttatattacttataatgaGTGA
- Protein Sequence
- MFELKACIVCLKSNVKIFSMNTGQLRKEFNLASGLKTNSHNGLPEYLCYQCVAHVRNFKKFRDKCQRTYYALQEVLHKNKEITKSIIEEIDSKALKIEPTLSYVTPNHFRIKYESAKFKWIKQNRLSTRNEDEISIFHYTTASDDFAFEVPRKKSKLLTELVQECIKVEEDNGENVLTNEPESLVENKNAVLDNDSFDTGFDICDEATDIDNNEATCKDDQEADGMNLDEEYATIVPISIVEAKAVVDVYKMFAHGKFQCSKCGKAYYNENRLNAHMRMHDTHTSGTYFCELCKYYYRTDFLLKTHMNEKHMYKYLCKKCPEVSFDRTSAKQHYIWSHMQKGSKKDANWYESQNSSANVNKNSKKNKLFIRPMRNTKRLPQDFPVYSPVSQEEQYAIVKDRQKTRNYIDSPYKCEHCYKGFREEITYQNHMKKHDPAHSGKLQCDACKIFCPDSRKMYKHMNMSHLFKYSCQMCSYVCFSRGQAKMHYKWHKNVTYSCPHCKKEFTKASTRLTHIRIKHPSTNICNLCGHSFVSVTGLYCHKKLAHTEQEVSASAGAADRAHPLYCADCDVQFRDHAALATHYGSSNKHADTNLSIKSLKKEGTGIRRGRPRQTESGIVNTGVPTSSTCDICNKYLANDSQARRHYDAEHPGAHFLKRYMCDICGHTTRQYANLTVHMRTHTLEKPYACPHCERRFSMPSNRDRHLVVHTGEKRYQCQHCHRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRRDAEAPLLPTAPLAPVPATAPLTQAPPSGTGHKLLLDTTHGNYLSAYITYNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00160143;
- 90% Identity
- iTF_00775516;
- 80% Identity
- -