Basic Information

Insect: Heliconius himera
Gene Symbol: -
Assembly: GCA_013421065.1
Location: JAATLT010012443.1:44433-53607[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.02 1.5 9.6 3.5 1 23 190 213 190 213 0.96

2 12 0.054 4.1 8.2 5.3 1 23 217 239 217 239 0.98

3 12 0.0007 0.053 14.2 3.6 1 23 245 267 245 267 0.98

4 12 0.00017 0.013 16.1 0.9 1 23 273 295 273 295 0.97

5 12 0.00052 0.04 14.6 0.3 2 23 303 325 302 325 0.90

6 12 2.4e-07 1.8e-05 25.0 1.3 1 23 331 353 331 353 0.99

7 12 0.0011 0.086 13.5 1.4 1 23 359 381 359 381 0.99

8 12 0.00098 0.075 13.7 2.6 1 23 393 415 393 415 0.98

9 12 1.3e-06 9.8e-05 22.8 2.1 1 23 421 443 421 443 0.97

10 12 0.00045 0.035 14.7 1.1 1 23 449 472 449 472 0.94

11 12 0.0073 0.56 10.9 7.0 1 23 506 529 506 529 0.97

12 12 3.8e-05 0.0029 18.1 3.1 1 23 534 557 534 557 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.02	1.5	9.6	3.5	1	23	190	213	190	213	0.96
2	12	0.054	4.1	8.2	5.3	1	23	217	239	217	239	0.98
3	12	0.0007	0.053	14.2	3.6	1	23	245	267	245	267	0.98
4	12	0.00017	0.013	16.1	0.9	1	23	273	295	273	295	0.97
5	12	0.00052	0.04	14.6	0.3	2	23	303	325	302	325	0.90
6	12	2.4e-07	1.8e-05	25.0	1.3	1	23	331	353	331	353	0.99
7	12	0.0011	0.086	13.5	1.4	1	23	359	381	359	381	0.99
8	12	0.00098	0.075	13.7	2.6	1	23	393	415	393	415	0.98
9	12	1.3e-06	9.8e-05	22.8	2.1	1	23	421	443	421	443	0.97
10	12	0.00045	0.035	14.7	1.1	1	23	449	472	449	472	0.94
11	12	0.0073	0.56	10.9	7.0	1	23	506	529	506	529	0.97
12	12	3.8e-05	0.0029	18.1	3.1	1	23	534	557	534	557	0.97

Sequence Information

Coding Sequence: atgtcgggTATTTGGAATTTAACTACTTTATGCAGATGCTGTCATGCAGACGGATTTTTTAAGTCTTTGGACTCTCCTCTTAAAGTGGATTATAATGatgaaatatatgtagaaatgttaaaaaatacattggGTTTGTATcTACAATCACCAGGATTTGAAGTGAGTAACACAATATGTGATGTATGTATTGAAAAGCTTAAGGAAGcatgcaaatttaaaaaacaagtgTTACAATGTGAGAggaaatttaaagaatattgcaATAATGAATTATTACAACAAGTGgagattaaaatagaaaaacatgaagATAAAGAAGTTATTGTAAAACCggaaattgttaaaaatgaagaaaatgataGTATCGACGTCTATGACAATGATAATAATGAACAAGAACAGGAAACAATAGAAATTTCTTTTGAATCAGAGGAAAAGAACGAAAATACCTTTAAAGTGAAAGAAAAgccaaaaatatctaataaaagcaacccaaaaaaaaaaccgtcGTTAAAGAGCAATCTCAAATGGTGTAACAGAATAAAAACTGACAACGGGTTCAAATATTCCTGTAAAAAATGTTCAGCGAACTTCGAcatgtacaaatatttatttaggcatATCTACAGGAAACACAAAAATgagtttaattgtaaaatttgtttCGAAACATTCGATGAACACAAAAAATACATcaatcattataaaaaacataaagaaaagaaattacatAAATGCGAATTCTGTGACAAGACCTATAATAATTTGCCTTCTCTCTATTACCATACAAACAcgcacatacaaaaaaaacagttcACATGTGATATTTGCGGTAAGGTGTTTTTACACAAGATTTCGgtaaagaaacatattttatggCACATGGGTATGAGTAAAAAGATAATGTGTGACGTGTGTGGCCACCCTTTTAATGATATAACTAATTTGAATAAGCATAAATCCGCTGTTCACGACAAAATTAGGccgtttaaatgtaatttatgtcCAAAAACCTTTGCCTCGTCCAAAAATTTAGTTTATCATATAAGAAGACACACCAACGATAGGCCATTTAAATGCGATTTATGCCAAAAAGCGTTTATaactataacaattttaaataaacacaaaaaaacacaCGATCCGAAAGACCAAATTGGCGATCCTAAATTGTATAGGTGTAAAATTTGCTCAATGTCATTCGACCACAAAGGTGTTTATTTGACACACATAAAAAATCACGACCTTATAAAGCCGTTTATTTGTGACACTTGCGGGAAAGGGTTTTGTACACAATACACGCTGAACCGCCATATTGACTCGCACAATGGTGTAAAGAAATTTTTGTGTAAGCTGTGCAATATGTCACTGTCAACTAAGAGGTTGTTGAATCGtcatttagaaaaaatacaCGATCCTAACAGACcaatcaaaaagaaaataacatgcGAAATATGCAAAATGGCGGTCACGGATAtggagaaacataaaaaaagtcatACAAATAAACGTTTTCAATGCTCATTTTGTACTAGATCATATTCAGAAAGGAATACATTGCATCGtcatataaaacataatcaTACCGGTATTACGCATTCTTGTACTTTGTGTGAAAAATTCTACGTACAGAAGGGTAGTTTGAGAAATCATATGAAAAAGGATCATAAAGAAAGTGTTAAAATGAAAGAAGAATAA
Protein Sequence: MSGIWNLTTLCRCCHADGFFKSLDSPLKVDYNDEIYVEMLKNTLGLYLQSPGFEVSNTICDVCIEKLKEACKFKKQVLQCERKFKEYCNNELLQQVEIKIEKHEDKEVIVKPEIVKNEENDSIDVYDNDNNEQEQETIEISFESEEKNENTFKVKEKPKISNKSNPKKKPSLKSNLKWCNRIKTDNGFKYSCKKCSANFDMYKYLFRHIYRKHKNEFNCKICFETFDEHKKYINHYKKHKEKKLHKCEFCDKTYNNLPSLYYHTNTHIQKKQFTCDICGKVFLHKISVKKHILWHMGMSKKIMCDVCGHPFNDITNLNKHKSAVHDKIRPFKCNLCPKTFASSKNLVYHIRRHTNDRPFKCDLCQKAFITITILNKHKKTHDPKDQIGDPKLYRCKICSMSFDHKGVYLTHIKNHDLIKPFICDTCGKGFCTQYTLNRHIDSHNGVKKFLCKLCNMSLSTKRLLNRHLEKIHDPNRPIKKKITCEICKMAVTDMEKHKKSHTNKRFQCSFCTRSYSERNTLHRHIKHNHTGITHSCTLCEKFYVQKGSLRNHMKKDHKESVKMKEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00777531;
90% Identity: iTF_00777531;
80% Identity: -