Basic Information

Insect: Heliconius himera
Gene Symbol: prg
Assembly: GCA_013421065.1
Location: JAATLT010025220.1:37558-40358[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.041 3.2 8.6 2.4 1 23 175 198 175 198 0.87

2 10 0.0043 0.33 11.7 0.2 1 23 204 227 204 227 0.96

3 10 2.6e-06 0.0002 21.8 3.6 1 23 233 255 233 255 0.96

4 10 2.1e-07 1.6e-05 25.2 2.8 1 23 261 283 261 283 0.99

5 10 1.4e-05 0.0011 19.5 0.1 1 23 289 311 289 311 0.97

6 10 0.0011 0.088 13.5 0.6 1 23 317 339 317 339 0.95

7 10 5.5e-05 0.0042 17.6 1.0 2 23 437 459 436 459 0.95

8 10 2e-05 0.0016 19.0 1.7 1 23 465 487 465 487 0.97

9 10 4.1e-06 0.00032 21.2 3.3 1 23 493 515 493 515 0.98

10 10 0.0027 0.21 12.3 0.0 3 23 524 544 522 544 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.041	3.2	8.6	2.4	1	23	175	198	175	198	0.87
2	10	0.0043	0.33	11.7	0.2	1	23	204	227	204	227	0.96
3	10	2.6e-06	0.0002	21.8	3.6	1	23	233	255	233	255	0.96
4	10	2.1e-07	1.6e-05	25.2	2.8	1	23	261	283	261	283	0.99
5	10	1.4e-05	0.0011	19.5	0.1	1	23	289	311	289	311	0.97
6	10	0.0011	0.088	13.5	0.6	1	23	317	339	317	339	0.95
7	10	5.5e-05	0.0042	17.6	1.0	2	23	437	459	436	459	0.95
8	10	2e-05	0.0016	19.0	1.7	1	23	465	487	465	487	0.97
9	10	4.1e-06	0.00032	21.2	3.3	1	23	493	515	493	515	0.98
10	10	0.0027	0.21	12.3	0.0	3	23	524	544	522	544	0.92

Sequence Information

Coding Sequence: ATGGatgattcttttattattgCAAATTTTCATACACTATGTCGTCTTTGTCTGAACAAAAGTGGACTTACCATATCAATATTTGGGACATCACCTGATGAAGATGCAAATTTATCTCTAACCTCGAAAATCGCCGAGTGTTTTGAACTCCAGATGGACCCAAATGATGGCTTACCAGCTAGAATATgctataaatgtttgtttaaagTAAACAAGTGCTCTAAGTTCAGATCACAGTGTATTCAAAGCGAAGCAAGATTGCGCCAAATAGTGAATCGAGCTCAAGAGCTGGAAACTTCAAATTCATCCGAAGTAAGtagttttaattacaaaaatactcaagaaacGCTAAAACCAAAGCAAGAAGAATATATTGTAGAAGACAGTGTAGTGATGGTGGTGGACCCTAGTTTAGATTATGATTCTTCTGAGGAATCAGAGAATGTTGACCAACCAGAAACTGACAATGCTGAGCAGGATAACACACCTGAAGGAGATACTCCTTCTTTTTACAAGAATGTTTTCATGTGTCAGTATTGTGACCAAGCATTTATTACTCAAGACAAATGTAAGGAACATGAACAAGGATTTCATGATCCAAACCATCCATATAAATGTGTTGAATGTAGCTTAGTTTTTGCTGAACGGACTCAATATGTAGCACATACCAAACAAGTACACGGCAGTGACAAACCATATCACTGTCCCGAATGTGATAAATGTTTCGGACGAAGATCTGACTTGAGAAAACATTCTATTGTACACACTGGTATCAGACCTTACCAATGTCAATATTGTTTGAAAAGTTTCTCCAGAAATACAAATTTGAGTAAACATTTGAGAATTCATGCTGGTCATAAGCCACACGTCTGTCCATTGTGCCCACGCAGTTTTGTTGCAAAAGGAGACTTGCAACGACATGTCTTAGTACATTCTGGTATGAAACCTTATGCATGTCGCAAATGTCCATTAACATTTGGAAGACGAGATAAACTTCTCAAGCATGAAGTCCGACATGGACCAGTCAGTCCTGAGCGCAAAGAATATGAAAGTGACCAAAACACACATGACATGGTTGTGAATGTTAATCCATTTAGTAATCTAATGACCTCACCTACTTCAATGAATCCCGATAGTGCAAACCATCCTAGTGATTATGAATTACCTAGGGTCCCAGATCACATAGCCGGTGAAGGAAGTTTCTTGACCCAAATGCAAAAGACACCATCTACTTCTGGCAAGCAATTACAACCTTCTCCACCAAAAAATAAAGTGTCCATACCAAACAAgaacaaaccaaaaaatataaaatgccaTCAGTGCCCCAAGAGATTTTCTTCATTAGATGCTTACAAAACTCATGTTTCTATAGCTCATATTGGTTCAAGAGtatttcaatgtaaaatttGCTTTAAGAAATTCCCACGTAAAAGGGAGTTGGACCGTCATGTTACAATACATTCTGGCATGAAGCCATTTAGTTGTAATCAATGTGACAAGAAGTTTACCAGAAAAGATAAACTTGACAAACATGAACAGACTCATGAATGCTTGGTTGTGAATATGCCTTGTATAGAATGTGGCGCCACATTTGAAAAGAAGCCAGATCTTGTGGCGCACATTAAATctcattttaatgataattttgaTGAGAAAATTCCAGAAACTGAAATTAAGAAAGAAACCGAACCAGACTTTCCAATTGATGAGAACTTTTATGACTTGGAGACCTGA
Protein Sequence: MDDSFIIANFHTLCRLCLNKSGLTISIFGTSPDEDANLSLTSKIAECFELQMDPNDGLPARICYKCLFKVNKCSKFRSQCIQSEARLRQIVNRAQELETSNSSEVSSFNYKNTQETLKPKQEEYIVEDSVVMVVDPSLDYDSSEESENVDQPETDNAEQDNTPEGDTPSFYKNVFMCQYCDQAFITQDKCKEHEQGFHDPNHPYKCVECSLVFAERTQYVAHTKQVHGSDKPYHCPECDKCFGRRSDLRKHSIVHTGIRPYQCQYCLKSFSRNTNLSKHLRIHAGHKPHVCPLCPRSFVAKGDLQRHVLVHSGMKPYACRKCPLTFGRRDKLLKHEVRHGPVSPERKEYESDQNTHDMVVNVNPFSNLMTSPTSMNPDSANHPSDYELPRVPDHIAGEGSFLTQMQKTPSTSGKQLQPSPPKNKVSIPNKNKPKNIKCHQCPKRFSSLDAYKTHVSIAHIGSRVFQCKICFKKFPRKRELDRHVTIHSGMKPFSCNQCDKKFTRKDKLDKHEQTHECLVVNMPCIECGATFEKKPDLVAHIKSHFNDNFDEKIPETEIKKETEPDFPIDENFYDLET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00353374;
90% Identity: iTF_00457422;
80% Identity: -