Hhim013388.1
Basic Information
- Insect
- Heliconius himera
- Gene Symbol
- -
- Assembly
- GCA_013421065.1
- Location
- JAATLT010024829.1:32583-48227[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0044 0.33 11.7 0.4 1 23 155 177 155 177 0.97 2 13 0.0017 0.13 13.0 1.5 2 23 184 205 183 205 0.95 3 13 0.02 1.5 9.6 1.9 2 23 213 235 212 235 0.96 4 13 0.0028 0.22 12.3 0.7 2 20 244 262 243 266 0.92 5 13 0.0013 0.097 13.3 4.2 1 23 271 293 271 293 0.98 6 13 0.00055 0.042 14.5 2.8 2 23 324 346 323 346 0.97 7 13 1.5e-05 0.0011 19.4 2.0 1 23 351 374 351 374 0.97 8 13 0.65 50 4.8 3.2 1 23 380 403 380 403 0.91 9 13 0.0098 0.75 10.5 2.1 2 21 409 428 408 429 0.92 10 13 8.8e-06 0.00068 20.1 0.2 2 23 434 455 433 455 0.95 11 13 0.045 3.5 8.4 0.1 1 23 461 483 461 483 0.96 12 13 4.2e-06 0.00032 21.1 0.8 1 23 489 511 489 511 0.98 13 13 3.2e-07 2.5e-05 24.7 0.3 1 23 517 539 517 539 0.98
Sequence Information
- Coding Sequence
- atgaaaaaatgtagaGCATGTCTTAAGATGGGAGATGATGAAAAAATGTAtcaatttaatgataaaatcaTTGAATGTTTTAATCTGCTCaccaatttaaatGTTAAGCTCAATGATATAATGCCACAACAAATATGTGAAAACTGCCTCGGcatgtttaatttgtttatggaatttagaaataaatgctTAAGTACTAACTCTATTCTATTAGACATGCACATAAAtgagattattaaaaatgaagaaataacaAGCAgtgattatattgatattaaactGGAACACATTAAGGAAGAACATAGTACATAtaagcaagattttttttcagatgaTAATGATAGTGTATACAGTAAAATTgatcaaaatattacttatgaactaattttaaaagatataaagtgCACAGAAGGTGatagtaaaaaactaaaaagaagaaGCAATAAACCTTCAGCAACTATTTACTCTTGtgGTCTATGTATTAAAGAGTTTAATGACAAAAAATTGTTGCTAACACATTTGAATGAACATAAAACCGACAGTGACAGTGTTTGTGATTTATGTTTGCAAAAATTTACTGACTGGCATCAACTATTTTCGCACAGACTTGAACacttgagaaataaaaatgagaaaGAGTGCCATAtatgtttttctaaatttaCATCACCACCATTTCTTGAGTATCACTATAAAAAAGTCCACTCTATGATCAATAATCCAACACTTCAGTGCTTGTCGTGTAATGAAAGTTATACAACGCCTCAACAATTTCGAAGACATATTTGGAAATCTcatgtagaaaataaatataattgtgattATTGTTCACACAGGTTTAacgatgaaaataaatttaaaaagcacATAGCTcgacataaacaaaataatgtaatgGGAGATGTAAATGCACATCCAAGTGTTAGAAGCATTGCTAAAAAAAACTCTACAAAGCCAGCCAACCAGTCTCAATGTCATCTGTGCAGTAAATTGTACGCTACATCTATTAAATTACGGAAACATATTCGAAGGATGCATtctgacaatatttatatttgtgattATTGTTCTAAGCaATACAGTTATAAGGACCTGTTAAAATCCCATATAAAAAGAACCCATTTAAAACATAAGATTTACACTTGTGACAAATGCGAATACAGTACTACGTTTATGACGAATTTAAAGtttcacaaaataagaaaacacaCTACCAAAAGAGTTTATTGCACAGTATGTTCCAGAGTGTTCTGTGACCAAAAGGCGCTCGACAATCATAAGTGTGTGCTTAAATCGTTAGTGTGCCCAACATGCGGGAAGatttttaaagcaaataaacagCTGAACCGTCACCTGGTGTCGCACGAGGCGGAGGGGCGCTACGCGTGCGCGCGATGCGGGGCGCGGCTGCGCTCGCGCGCGGCGTGGCGCGCGCACCGCGACCGCCACGACGGCGTGCGCGCGCACCGCTGCCCGCGCTGCCCCGCCGCCTTCTACTCCGCCTCCGTGCTCACTAAGCACATGCGGACACATACCGGAATAAAACCATATGTTTGCAAAATATGTGAAAAGGGTTTCACTGGTAACAACAACTTGAAAGTGCACATGAAGGTTCATGgtgaatatttgattaaaaataaagtaaaaaatgaagacgaagaaaaattacaaaaattataa
- Protein Sequence
- MKKCRACLKMGDDEKMYQFNDKIIECFNLLTNLNVKLNDIMPQQICENCLGMFNLFMEFRNKCLSTNSILLDMHINEIIKNEEITSSDYIDIKLEHIKEEHSTYKQDFFSDDNDSVYSKIDQNITYELILKDIKCTEGDSKKLKRRSNKPSATIYSCGLCIKEFNDKKLLLTHLNEHKTDSDSVCDLCLQKFTDWHQLFSHRLEHLRNKNEKECHICFSKFTSPPFLEYHYKKVHSMINNPTLQCLSCNESYTTPQQFRRHIWKSHVENKYNCDYCSHRFNDENKFKKHIARHKQNNVMGDVNAHPSVRSIAKKNSTKPANQSQCHLCSKLYATSIKLRKHIRRMHSDNIYICDYCSKQYSYKDLLKSHIKRTHLKHKIYTCDKCEYSTTFMTNLKFHKIRKHTTKRVYCTVCSRVFCDQKALDNHKCVLKSLVCPTCGKIFKANKQLNRHLVSHEAEGRYACARCGARLRSRAAWRAHRDRHDGVRAHRCPRCPAAFYSASVLTKHMRTHTGIKPYVCKICEKGFTGNNNLKVHMKVHGEYLIKNKVKNEDEEKLQKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00778217; iTF_00774682; iTF_00782107; iTF_00782829; iTF_00780573; iTF_00775455;
- 90% Identity
- iTF_00775455;
- 80% Identity
- -