Hhim014193.1
Basic Information
- Insect
- Heliconius himera
- Gene Symbol
- -
- Assembly
- GCA_013421065.1
- Location
- JAATLT010009187.1:137460-163650[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.15 11 6.9 0.2 3 23 220 241 218 241 0.93 2 18 0.065 5 8.0 0.5 2 23 267 289 266 289 0.93 3 18 0.07 5.4 7.9 0.4 2 23 312 333 311 333 0.96 4 18 0.0003 0.023 15.3 0.7 3 23 339 359 337 359 0.96 5 18 2e-06 0.00015 22.2 0.9 1 23 364 387 364 387 0.98 6 18 1.5 1.2e+02 3.7 0.3 2 23 395 417 394 417 0.84 7 18 0.00011 0.0087 16.6 0.6 2 23 425 447 424 447 0.96 8 18 5.2e-06 0.0004 20.8 1.5 1 23 453 475 453 475 0.98 9 18 2.1e-05 0.0016 19.0 4.1 1 23 481 503 481 503 0.99 10 18 0.00017 0.013 16.1 2.7 1 23 509 532 509 532 0.97 11 18 0.0032 0.25 12.1 0.9 1 23 595 618 595 618 0.94 12 18 0.7 54 4.7 0.1 2 23 645 667 644 667 0.92 13 18 0.15 11 6.8 0.2 5 23 693 711 689 711 0.90 14 18 0.3 23 5.9 0.0 1 21 715 735 715 737 0.88 15 18 0.12 9.1 7.1 1.7 1 19 742 760 742 765 0.83 16 18 0.00073 0.056 14.1 0.9 2 23 803 825 802 825 0.95 17 18 0.0064 0.49 11.1 3.9 1 23 831 853 831 853 0.97 18 18 0.0018 0.14 12.8 2.6 1 23 859 882 859 882 0.98
Sequence Information
- Coding Sequence
- ATGGAGCCTCTATTAAATAATGGCATATGTCGGTGTTGTGCTTCCGAGGGCAGTTTCAAAGACTTTCTAACATCGTATCATTGGATGGGCGAGGAAGAAGTTTATGCCGACATGTTAAAAGATTGTTTTTCTATTTCGTTAAGTGTATCAGAGGATTATAGTAACGGCGGTATATGTGAAGTGTGCATCACACATTTACGAAATGCATGTAATTTCAAACGACAAGTTTTACAGACGGAGGAGCATTTCAAGAGACATGTCCAAGGcattttacttaaatCAAATCCCATCAAAATCGAACCGGTGCGAGATGAGGGGGAACAGTCAGATCACAATATGTCGGACGATTTTTCTACAAATGATTACGAAATGCCATTGAAAATGGAGAAAGTAGAAGAAAAGCCAAAGAAACGTCAAGCCAAAGCGTCCACTTCCAGAACTAAAAAGACGAAGACCGCAGATGGAGAGCCCTCGGCTAAACgtatACGAACCATTAAAATCGAAAGGCGTTCAACACCTCGAGTCGAGTTGAAGATCATTCGGGGCATCAGGGAACCTAAACTATCGGATGCCAGGAAAAACCAACAAAATCTTATGACTATTTTGCTTTGTTCCAATGCCAATCCTATTAGATCGAAGGATAGTCTTGGATACGGTTGCGCGTTTTGTCTCGAACAGTTTCAGAATCCGACCGAccttaagaaacattttttagtAGAACATAACAACGACAGATTAATCCAGTACATGACGTCCAGATTATTTGAACATGTCGTTAAATTAGACATTACCTACTTAAGTTGCTCCCTTTGCAGCACTAGTGTAGCAAAATTGGAGGATTTGATGCATCACTTGAAGGATGAGCATAAACAAGAAATACACACAGATATAAATAACACTATAGTACCGTTTAAATTCGACACTCCGGAACTAAGATGCGCAATTTGTTCCACGGAGTATCTAAACTTCAAACTGTTACAGGAGCATATGAACACTCATTTCGGATATCATTTATGTCCATTATGTAGCCGAGGCTTTATTACTGAGCGCCTTTTAGCCACTCACATCAGGAGACATGACAACGGTGTATACAAATGTCAAGAGTGCGATAAAGTGTTTGGTAATAATGAGAGGTTAAAGGAACATCAGAGACGGATTCATTTAGGGTTCAACAAACGCAACAAATGTATGATATGTGATGAACGTTTCATGGATTACTGGAGGAAGGTCGACCATATGGTCAAAGTGCACGGAGCACCGCCGGTAGTCATAAAGTGCCAAGCTTGCGACCGCACGTTTATCAACCAGAGGGCTCTGGCGCGGCACACTAAAAAAGACCACCTTATGGAAAAAAAGCACCAATGTGAAGAATGTGATATGAGATTCTTTAGCGCTAGCGGATTAAAGCGTCATATGGCGAAGCACACAGGACTGCGCGAGTTCAGATGTGATATTTGCTTCAAATGCTACGGCAGAAAGACTACGTTAAGAGAACATATGCGTATACATGCAGACGACCGCAGGTTTGCCTGTAGTAGATGTGGTCAGGCTTTCGTACAAAAGTGCAGTTGGAAGAGTCACATGAGATCCAAACATGGTGACCAGAAAACAATTCCAACAAATGTGGGAAGAAAAGACCGAAAAGGCAAAACCATACGAATAACTGTTGAAAAGAAACTAAACATGGTGATTGTGTCAGAGGTCGAAAagcatcaaaataatataaaagaaattctttTGAATACGAATGCTACACCCATTCGTTGTAAGGGAGGCATTGGTTATGCGTGTTGCTTCTGCTCTGAGCAGTTTCCTGATCCAAAAGATTTAAAAGCACACACCCAAGAATCTCACAGTGCTGAAGAAAAATCTACATTTATGAAAGGCAAAGACATGCACGGCTATTTCGTTAAACTGGATATCACAGACGTTAAATGCCAAATTTGTGGAGAAACCATGGAAAGTGTAGAGAAAGTAGTCAATCATCTGCAAATGAATCACGGTAAGAAACTTTATACGGACATTAAGGATCACATACTACCCTTTAAATTTGGCAATGGACCTCTCAACTGTATTATATGTTTGAACGTATTTAACTCTTTCAAAGCTCTCCAGGAACACATGAATGTTCATTATAGTAACTATATATGTCTAGTCTGCGGCGCGGGTTTCGTTAATAAAAACATCCTTCTAAGACACGGAGATGCTCACAAAATAGGAACGTTTACCTGCGAAATTTGTTCCAGAACCTTCGATACGGAGCGAAAAAAGCGATTGCATGATCGATCAAGACACGCCGGGATAAAATTGCCTCATAAATGTGGTTACTGCATGGAAAGATTTAAAGAAGTTTGGAAGAAACAGGAGCATTTGGTTAAAGTTCATGGAGTTAAGAGTCCAGGGATCAAGTGCCAAGCGTGTGACAAGAGTTTCGAAAGCAAACATTCTTGGAGGCTGCATATAGCAAGAGTGCATCTCTTGCAAAGACCACACAAATGTCAGCATTGTGAAATGGAGTTTTATGCTAAGAAGGAGTTGGAGAGCCACATGGTGAAGCATACTGGTTCCAGGGAATTTAAGTGTCAATCATGTTTCAAGACTTACGGACGATTGAAGACCTTAAAAGAACATGTCCGAAAAGTACACACTTGA
- Protein Sequence
- MEPLLNNGICRCCASEGSFKDFLTSYHWMGEEEVYADMLKDCFSISLSVSEDYSNGGICEVCITHLRNACNFKRQVLQTEEHFKRHVQGILLKSNPIKIEPVRDEGEQSDHNMSDDFSTNDYEMPLKMEKVEEKPKKRQAKASTSRTKKTKTADGEPSAKRIRTIKIERRSTPRVELKIIRGIREPKLSDARKNQQNLMTILLCSNANPIRSKDSLGYGCAFCLEQFQNPTDLKKHFLVEHNNDRLIQYMTSRLFEHVVKLDITYLSCSLCSTSVAKLEDLMHHLKDEHKQEIHTDINNTIVPFKFDTPELRCAICSTEYLNFKLLQEHMNTHFGYHLCPLCSRGFITERLLATHIRRHDNGVYKCQECDKVFGNNERLKEHQRRIHLGFNKRNKCMICDERFMDYWRKVDHMVKVHGAPPVVIKCQACDRTFINQRALARHTKKDHLMEKKHQCEECDMRFFSASGLKRHMAKHTGLREFRCDICFKCYGRKTTLREHMRIHADDRRFACSRCGQAFVQKCSWKSHMRSKHGDQKTIPTNVGRKDRKGKTIRITVEKKLNMVIVSEVEKHQNNIKEILLNTNATPIRCKGGIGYACCFCSEQFPDPKDLKAHTQESHSAEEKSTFMKGKDMHGYFVKLDITDVKCQICGETMESVEKVVNHLQMNHGKKLYTDIKDHILPFKFGNGPLNCIICLNVFNSFKALQEHMNVHYSNYICLVCGAGFVNKNILLRHGDAHKIGTFTCEICSRTFDTERKKRLHDRSRHAGIKLPHKCGYCMERFKEVWKKQEHLVKVHGVKSPGIKCQACDKSFESKHSWRLHIARVHLLQRPHKCQHCEMEFYAKKELESHMVKHTGSREFKCQSCFKTYGRLKTLKEHVRKVHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -