Hhim012147.1
Basic Information
- Insect
- Heliconius himera
- Gene Symbol
- -
- Assembly
- GCA_013421065.1
- Location
- JAATLT010001478.1:8586-15084[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00063 0.049 14.3 0.3 2 23 212 233 211 233 0.96 2 12 0.017 1.3 9.8 1.2 3 23 256 276 254 276 0.92 3 12 0.025 1.9 9.2 3.1 2 23 289 310 288 310 0.97 4 12 0.012 0.89 10.3 2.1 1 23 318 341 318 341 0.92 5 12 3.9e-05 0.003 18.1 2.2 1 23 347 369 347 369 0.96 6 12 1.3e-07 1e-05 25.9 2.9 1 23 375 397 375 397 0.98 7 12 2.9e-07 2.2e-05 24.8 0.6 1 23 403 425 403 425 0.96 8 12 4.4e-06 0.00033 21.1 3.0 1 23 431 453 431 453 0.98 9 12 2.6e-07 2e-05 24.9 0.6 1 23 459 481 459 481 0.98 10 12 0.00012 0.0093 16.5 1.4 1 23 487 509 487 509 0.98 11 12 1.5e-05 0.0011 19.4 3.6 1 21 515 535 515 537 0.96 12 12 0.00011 0.0087 16.6 1.0 1 23 543 565 543 565 0.97
Sequence Information
- Coding Sequence
- ATGGATAGCAAGGTATTTTTACAGAATAATATATGTAGAGCTTGTCTAAGCGATGCGTCGAGTTATAAATCATTACTGAGCACAATGGACGCGGACAATCGCACTGTTTTCGAAGTTCTTTCTTtcataactaataataatatttctataaaggaTAATCTCCCGAAGCAGGTTTGCAACGATTGCTTCGTTACAATATGCAAGGCTGATGagtttataaaaatgtgtattcAGTCAGAAAACTTAttaaagaatgaattatttaactcTACTTTAGAGTCAGGTAAAACTGAAAAACTATTTTACACAACTTTCGATATAGCAAAATCGTCTGCGGAAGATCAAAAACCTAACTATCTGAACTACTctaataaatttgataatttaaatgttattaaagagGAGCATGATGAGTTTCTTCAAGAAGACATGGAAGATTTAGcagaaaatattgttatagaaaataatcaattacacGACACAAGTAGTACAGATAGTGCATGTACCGATCAGTTTGAATTAGaatcaaatttaaaagaatGCACACATTTGTACAAGCAATATAACAGTAGTATTGTTAAGAAAGAATTAACTGATACAGAAAACCAAGAAATAAATCGAAAGCCTATATTAATTTGTCCAGTTTGTGATGAAGTGTTTGAATATTGCACATTATATGCACTCCATTTGAAAACTCATAAGAAAAAAGCTaaagttaaacataaaaaactgaaaaagatAACAAACTTGACAATTCCACTATCATGTATAGAGTGCAATGAAAATTTTCCAGATATGACTTCTTTGAAAAAGCATTTATGTAAtcacaatgaaattaaaaatcaaaaagaaacaTCTAAACTTCAGTGTTCAATGTGTATGCACCATTTTGGTCGgaaaatatcattaatagctcatataaaaaaacataaggaGAAggctaaaacaaaattttcatgTAAAGCTTGTAAACGAGAGTTTCAACATCAAGCACATTTAGATAATCATATAGTGTTAATTCATTCTAAAGAAAAAGgaTTTACATGTGACAAGTGTAACAAAAGTTTCTCATCTCAAGACTGCCTCGACCTCCACTTGGAGGGGCACAAATTGGACAAAAAACATCAATGCAACATATGCAATAAGAGTTTTTCTATGCTATCGACTTTAAATGAACACATGAGGACTCATACTGGTGAAAAACCTTTTCTGTGCTCGATCTGTGGAAAGGGATTCAGCCAGAAAAATAACTTAGCCCAACACGTCAGGCGGCATCAGGGGTTAAAGCCCTTTAAATGTGAACATTGTGATAgaagATTCGTGTCCAAAGGTGAGCTAGAATCGCACAACAGAAAACACAGCGGGGCCCACCCGTTCGTGTGTGACGAATGCGGCAACGGCTTCACGACGTCCAGCTCTCTGACCAAACACCGGCGGATACACAGCGGCGAGAGGCCCTACGCCTGCGATCTTTGCCATATGAAGTTTGCCGTGTTGGGCACCCTGAAAAACCACAGGCGGACCCATACTGGGGAAAAACCGTACCAGTGTTCCCATTGTGATAAGGCCTTTATACAAAAGACTGATTTAGTCTCCCACATAAGGTGCCATACTGGCGAGAGGCCGTACACTTGCGCGTGTTGTGGACAAGGATTCAGGAAGGCATCGGCCTTGAAAGTGCATGTGAGGACTCATGGCAAGGAAGCGGTGGTCATgtga
- Protein Sequence
- MDSKVFLQNNICRACLSDASSYKSLLSTMDADNRTVFEVLSFITNNNISIKDNLPKQVCNDCFVTICKADEFIKMCIQSENLLKNELFNSTLESGKTEKLFYTTFDIAKSSAEDQKPNYLNYSNKFDNLNVIKEEHDEFLQEDMEDLAENIVIENNQLHDTSSTDSACTDQFELESNLKECTHLYKQYNSSIVKKELTDTENQEINRKPILICPVCDEVFEYCTLYALHLKTHKKKAKVKHKKLKKITNLTIPLSCIECNENFPDMTSLKKHLCNHNEIKNQKETSKLQCSMCMHHFGRKISLIAHIKKHKEKAKTKFSCKACKREFQHQAHLDNHIVLIHSKEKGFTCDKCNKSFSSQDCLDLHLEGHKLDKKHQCNICNKSFSMLSTLNEHMRTHTGEKPFLCSICGKGFSQKNNLAQHVRRHQGLKPFKCEHCDRRFVSKGELESHNRKHSGAHPFVCDECGNGFTTSSSLTKHRRIHSGERPYACDLCHMKFAVLGTLKNHRRTHTGEKPYQCSHCDKAFIQKTDLVSHIRCHTGERPYTCACCGQGFRKASALKVHVRTHGKEAVVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00775436;
- 90% Identity
- iTF_00778177; iTF_00776174; iTF_00774646; iTF_00782009; iTF_00778906; iTF_00782814; iTF_00775436; iTF_00781202;
- 80% Identity
- -