Hhim004754.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Heliconius himera
Gene Symbol
-
Assembly
GCA_013421065.1
Location
JAATLT010012443.1:36867-45688[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0026 0.2 12.4 1.4 1 23 447 470 447 470 0.95
2 13 0.012 0.93 10.3 0.6 1 23 476 498 476 498 0.94
3 13 8.8e-05 0.0068 17.0 3.2 1 23 504 526 504 526 0.98
4 13 9.1e-07 7e-05 23.2 3.2 1 23 532 554 532 554 0.99
5 13 4.7e-07 3.6e-05 24.1 1.1 1 23 560 583 560 583 0.95
6 13 4.4e-05 0.0033 17.9 2.9 1 23 589 611 589 611 0.96
7 13 1.9e-05 0.0015 19.1 1.1 1 23 617 639 617 639 0.98
8 13 0.00068 0.052 14.2 1.3 1 23 645 667 645 667 0.98
9 13 1.2e-07 9.4e-06 26.0 0.8 1 23 673 695 673 695 0.98
10 13 3.5e-07 2.7e-05 24.5 1.5 1 23 701 723 701 723 0.98
11 13 0.049 3.8 8.3 2.4 1 23 729 748 729 748 0.95
12 13 1.5e-06 0.00012 22.5 0.4 1 23 754 776 754 776 0.98
13 13 0.00012 0.009 16.6 4.5 1 23 782 804 782 804 0.97

Sequence Information

Coding Sequence
ATGCACCCAGATGGAAAAGCTCACGGTGGCTCAGCAGTCTTAATTAAGAGTAATATCAAGCACTACGAGTCCCCATCTTACTCGAAAGCTTACCTTCAGGGCACTAGTATTGTTGTTACTGACTGGCTCACTCTACCACGAGGACGCGAACTTTTTAAATGCATCCAAAGTAACAATCTCGAAGTTTTGTCGTATGGAGAACCCATTTATTGGCCAACAGATCAAAACAAAATACCTGACGTTATTGATTTCTGCGTAGTGAAAGGAATTTCTAAAAGGTATATATCGTGCAAAAACAGTTTAGACTTATCGTCAGACCACTCACCAATTATTGTTAGCTTATCTACTGCCTTGGTTGAAAAAGAACCTAAATGCGTCTTACACAATAAAAGGACTGATTGGACATTATTTCGCTACTTTGTCGATTCCGCTCTCAAAGAGCCTATTAAACTAAAAACAGAAACAGACATTATTGCAGCAGTTGAATGCTTTACAAAAACTGTACAAGATGCAGCATGGAACTCTACTCCAGAAAGCAAAAGAATGGCTGATGATTACTATATAACTAACAATATAGTAGAACTTTTAAACAAGAAAAGAAAGCTCCGCAAAAAGTGGCAATCAAATCAGTGCCCTCGATTAAAAAAGCGATTAAATTATACCACTAGATTGCTCACTAACATTATTACAATAGAGCGAAATAGTAGCTTTGGAAGTTTTTTGGGTGGACTTGACGCAACCTCCAATACAGACTATTCCCTATGGAAGGCCacgaaaaaatttaaacagcCTGTAACGAATTCCCCAGCTCTTCGAATGTCAAATGGCAAATGGGCTCGAACGGACACTGAAAAAGTTGATCTTTTTTGTAATCACCTAGAATCTGTGTTTAGACCTCACCCGAATGAAAACCCGCCTACCGATGAGAAAGAAGTTTTGGAATTCTTAAGTGATGAAAATACGAGAAACGAGGAAGTTACGATAAAATTCACTAAAGATGAAGTGATACGCGCAATCAAAAATGTCGATCTCAAAAAGGCACCTGGATACGACCTCATTACTGCCAGATTACTAAGAGAATTACCACAATCTTGTCTAAAACTACTTACGTCTATCTACAACTCTATGAATATTGGTTTTAATTGCAAAGAAATCAAAGATGAAATCGAAGATGACgagttcaaaaaagaaattctaaatcaaaacaaaaacagCTTCGACCAAAAATATGATGATGgtTCATTTAGTGACATAGGAGATGATGATCAACCACTGTCTACGTTAAAAAGTAACTGCGATCAAAATGAATGGATAACGCCAAATATAGGCGAAAAACCTCACCCTTGCTACATATGCAACACTAAATACAGTCTAAATAAAGAACTTATAAAACACATTACTATAAAACACAGcataaataactcattcccctgTATAAAATGTcctaaaaattttgaaaaagcaCGTTTTTTGAAAAATCATTTAGTCACCCATTTTGGGGTTGAAAAGTTTAAGTGTGTTCATTGTGAAAAGGAATTTCAAAGGAAGAAAGGGTTGAAAGAGCATTTAAAAGTTCACACTGGGGAACGTAATTTTACTTGTGATATATGCAATAAGTCGTTTGGCCATAATCAGACCCTGAAAAGTCATATTCGTACCCACACTGGTGAACGACCGTATGTATGCGACATATGCGGCCGTAGATTCCCACAAAGGACACATTTGAAGCGCCACATCTTTATTATACACACCGGCGTTAAACCACACGCGTGCAAAGTATGTAATAAACAGTTTTCCAGCAAAAGTTACTTATCCATCCATGAGAGACAACACACGGGTGAGAAACCCTACAATTGTAGCATATGCAAGAAAGATTTCACTGCATATACTACTCTAAAAGTACATATGCGTGTACATACAGGCTTAAAACCGTATATATGCTCATTTTGTAACCGTCAATTCGCTCAAATGGCCAGTTTTAAGCTACACGAGCGTACTCACACTGGGGAACGCCCATTTTCTTGTAAAGTATGCAAAAAAGCGTTTTCTGACAATGGTTACTTGAAAATACACATGCGCGTTCACACGGGGGAGAAACCGTTTACTTGTGATATATGCAAACGTTCGTTCAGAGAAACTGGACAGTTGAAACGTCATATGCGTGTACACACGGGGGTGAAACCCTACACATGCAAGATATGCAACAAACAGATAGGGAATCTATCTAAGCATATGCGAGTCCACTCTCAGGACAGGCAGTTTAGTTGTGGCATATGCAACAAGCAGTTTTCCATAAATGGTAATTTGAAGTTGCATATGCGTGTGCACACGGGAGAGAAGCCGTTTGCATGTGATGTATGCGACAGCCATTTTAGTCAGAGCAGTGGTTTGAAAAGGCATAGATGTACTCATGAGAAAATtgaatag
Protein Sequence
MHPDGKAHGGSAVLIKSNIKHYESPSYSKAYLQGTSIVVTDWLTLPRGRELFKCIQSNNLEVLSYGEPIYWPTDQNKIPDVIDFCVVKGISKRYISCKNSLDLSSDHSPIIVSLSTALVEKEPKCVLHNKRTDWTLFRYFVDSALKEPIKLKTETDIIAAVECFTKTVQDAAWNSTPESKRMADDYYITNNIVELLNKKRKLRKKWQSNQCPRLKKRLNYTTRLLTNIITIERNSSFGSFLGGLDATSNTDYSLWKATKKFKQPVTNSPALRMSNGKWARTDTEKVDLFCNHLESVFRPHPNENPPTDEKEVLEFLSDENTRNEEVTIKFTKDEVIRAIKNVDLKKAPGYDLITARLLRELPQSCLKLLTSIYNSMNIGFNCKEIKDEIEDDEFKKEILNQNKNSFDQKYDDGSFSDIGDDDQPLSTLKSNCDQNEWITPNIGEKPHPCYICNTKYSLNKELIKHITIKHSINNSFPCIKCPKNFEKARFLKNHLVTHFGVEKFKCVHCEKEFQRKKGLKEHLKVHTGERNFTCDICNKSFGHNQTLKSHIRTHTGERPYVCDICGRRFPQRTHLKRHIFIIHTGVKPHACKVCNKQFSSKSYLSIHERQHTGEKPYNCSICKKDFTAYTTLKVHMRVHTGLKPYICSFCNRQFAQMASFKLHERTHTGERPFSCKVCKKAFSDNGYLKIHMRVHTGEKPFTCDICKRSFRETGQLKRHMRVHTGVKPYTCKICNKQIGNLSKHMRVHSQDRQFSCGICNKQFSINGNLKLHMRVHTGEKPFACDVCDSHFSQSSGLKRHRCTHEKIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-