Hhim020052.1
Basic Information
- Insect
- Heliconius himera
- Gene Symbol
- clz9
- Assembly
- GCA_013421065.1
- Location
- JAATLT010007960.1:62831-65762[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-08 1.4e-05 24.8 0.0 2 36 9 42 8 49 0.88 2 2 5.5 6.2e+03 -2.8 0.0 27 35 116 124 116 129 0.82
Sequence Information
- Coding Sequence
- ATGGCACCAAGAAAAGACTACACAACAGAACAAATGGCCAAGGCTATCGAAGAAGTAAGAAAAGGAGAAAAAATATCTGTTGCAGCTACAAGATATGGTGTCCCAAGGATTACTTTGCATAATAAAATCACCGGAAAAAGCCCTGTTGATTGTAATCTTGGTCCAGCTACTGTACTTTCACATGAGGAAGAAAATATACTAGTGAGATGGGTATGCTTTATGGCTGAAAAACATTTCCCTGTAACCAAAGAGCAATTGCTTGATAGTGTCCAGAAAATAATATCTGAGAAAAAATTAGATTCCTGTCCGTTCACAAACAATCGGCCAGGAAAAANNNNNNNNNNTGGTGTCCCAAGGATTACTTTGCATAATAAAATCACCGGAAAAAGCCCTGTTGATTGTAATCTTGGTCCAGCTACTGTACTTTCACATGAGGAAGAAAATATACTAGTGAGATGGGTATGCTTTATGGCTGAAAAACATTTCCCTGTAACCAAAGAGCAATTGCTTGATAGTGTCCAGAAAATAATATCTGAGAAAAAATTAGATTCCTGTCCGTTCACAAACAATCGGCCAGGAAAAATGTGGTActctttgtttttaaaaaggcaTCCAGATCTCTCTGAACGCACAGCGCAGAATTTAAGCAAAGCGAGAGAAGAGGTCACAGAAGATGACATACTCCGTTGGTTTGATGTAATAAAAAGTTACCTTGAAAATAAAGGCTTGCTTGAAGTGATAAATGACCCTGAAAGAATTTTCAATTCTGATGAAAGCGCATTTTATTTACAACCAAAAGCTGGACGAGTCCTAGTGCGCAAAGgcgaaaaaaatgtttatacttcATCAGGAGACGAGAAAGAAAATTTAACTGTGTTGGTTACTGGGAACGCTGCTGGAGTTTTAGCTCCACCAATGATAGTATACCCCTATGAGCGTTTACCTGCCGTAATTGCTAATAGCGTACCAAAAGATTGGTGCATAGGCAGATCACACATGACCCTGCATTTATCAGATTCTTGTAAAGCTAATGAGATTGAAGTTATCTCTCTATATCCTAACTCGACACATCTACTTCAGCCAATGGATGTTGCGGTGTTCAGGCCTTTAAAGGTATCGTGGCAGAATCAAGTGAAAAGTTGGAAAATCGATAatccaaaacaaacaatgaaAAGAGAGCATTTTGCTCCAAACTTTGAGGCAGCTTTGCGAAACATTGCCACTGATACAATAAGAAACGGATTTCGAAAAAGTGGGCTTTTCCCCTTTGGTCCAGAATACGTCGATATGAACAAAATAAGTTCACACAATCGTGCTACAGTTTCCACATCagcattagaaaaaaaaattgacacgaCAAAACAGTTTATGAATATCTTGGAATCAGAAATAAGAAGCTTGTTcacaaatgaaaaattaaagttattcacCAGGCTGTACTATATGCCCAGAGCTAACGTTGAGGACCAGCTTCCAAATGAAGATCTGTCGTTATATACCATCTGGGCTAAAACTAAAgagtatttaaatgaaaatttacccCAGAAAGTTGCCGCAACTATCACGGAGCAAGTCTCGCATTCTTCAGAGCCTGAACATGTAACAGAATCCGAATCATTGCCACCACAAACACCTGAGGCATTCGTGGCCGACAATTCAATTTCTACTTTACCTGAACATGTATTGGACGTCTCTGACCACATCTCTGACAAaccattaattacaaaaaatttacaGGGAAGGTACTTTGGACCAAGTACGTCACAAGTTTGTACAGACACGAATGCTTCTGATAGTGGCAATCCAGATTTACAAGAAGAGGACATCGGAAGACCTGAATCCGTTCTAAAATTATCGAAAACGGTTTCCAAAGATATTGCCCAGCAAGCAATGCGTACTACTCCAAACAAAGTTTTCACTCCTGAAACAAATGACACTATAGCACAATCCTTGTCTTCCAGTTCCCAAAATATAATAGAGGAAAATATTGAACCTGTTACCGAATCAACGAAAACAATATCAAAAGACATTGCCTGCTCTGCAATATATAGTACTCCTAATAAAGTTCAGAATTCTGAATTAAATAACACTATATCCAAGCCTATGCCTTCAAAGCCACAAAATGTAATGGATGAAAATATTCCATCGCCATTTAAGCGTGCTTTATTTTGGCCAGAaccagaaatgaaaaaaaggCGTAGTAAGGAACGTCTTCCTTCGGCAATCACTGGTGAGACTTGGAGAGCATATATGattaagaaagaaaatgaaaagaaacaGAAGGaagaagagaaaaagaaaagaattaaagaaagacaAGAAAAACAACGAATAAAAAAGAAGACATCTGAAGAACGAgagaaagttaaaaataaaaagaaaataacaaaaactgtAAGTAACAAAAGAAAGAGAATTGAATCATCTAGTTCATCAGCAGAAGAAAATGATATACCCTATCAAGAAAGTGACCAAGATTTAGAGTTGTCTGAAGACGACCAGATAAACTGCCCAAAACTCACTACTGAATCACTAGAGTCAGATGAAAATATTCCTCTAAAAGACCTATCCTTGCAGTcactaaagaaaaatacatatgttattattaaatacgaaGCAGAATACTTTCCCgggtttattaaaaatattgataacaaTACTTACGAAATAAGTACAATGGTTCTATCAAGAGGAAATATATTTCGGTGGCCCGACACTCCAGATCAAATTTGGTATAATAGGGAAGCTATAATGGAAAAAATTCAAAAGCCTAAAACTATCAACAATAGGGGCTTTTTTAAAGTAcctgaaatggaaaaatatttaccatttaTATGTTAA
- Protein Sequence
- MAPRKDYTTEQMAKAIEEVRKGEKISVAATRYGVPRITLHNKITGKSPVDCNLGPATVLSHEEENILVRWVCFMAEKHFPVTKEQLLDSVQKIISEKKLDSCPFTNNRPGKXXXXGVPRITLHNKITGKSPVDCNLGPATVLSHEEENILVRWVCFMAEKHFPVTKEQLLDSVQKIISEKKLDSCPFTNNRPGKMWYSLFLKRHPDLSERTAQNLSKAREEVTEDDILRWFDVIKSYLENKGLLEVINDPERIFNSDESAFYLQPKAGRVLVRKGEKNVYTSSGDEKENLTVLVTGNAAGVLAPPMIVYPYERLPAVIANSVPKDWCIGRSHMTLHLSDSCKANEIEVISLYPNSTHLLQPMDVAVFRPLKVSWQNQVKSWKIDNPKQTMKREHFAPNFEAALRNIATDTIRNGFRKSGLFPFGPEYVDMNKISSHNRATVSTSALEKKIDTTKQFMNILESEIRSLFTNEKLKLFTRLYYMPRANVEDQLPNEDLSLYTIWAKTKEYLNENLPQKVAATITEQVSHSSEPEHVTESESLPPQTPEAFVADNSISTLPEHVLDVSDHISDKPLITKNLQGRYFGPSTSQVCTDTNASDSGNPDLQEEDIGRPESVLKLSKTVSKDIAQQAMRTTPNKVFTPETNDTIAQSLSSSSQNIIEENIEPVTESTKTISKDIACSAIYSTPNKVQNSELNNTISKPMPSKPQNVMDENIPSPFKRALFWPEPEMKKRRSKERLPSAITGETWRAYMIKKENEKKQKEEEKKKRIKERQEKQRIKKKTSEEREKVKNKKKITKTVSNKRKRIESSSSSAEENDIPYQESDQDLELSEDDQINCPKLTTESLESDENIPLKDLSLQSLKKNTYVIIKYEAEYFPGFIKNIDNNTYEISTMVLSRGNIFRWPDTPDQIWYNREAIMEKIQKPKTINNRGFFKVPEMEKYLPFIC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -