Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 6e-05 0.85 10.3 12.5 1 19 44 62 44 62 0.99

2 10 2.8e-06 0.04 14.6 11.4 1 19 103 125 103 125 0.88

3 10 0.76 1.1e+04 -2.8 1.7 6 10 155 159 155 159 0.95

4 10 0.0034 49 4.7 7.3 1 11 165 175 165 176 0.93

5 10 0.017 2.4e+02 2.5 1.2 4 10 180 186 179 186 0.93

6 10 8e-07 0.011 16.3 14.0 3 19 194 210 192 210 0.92

7 10 0.87 1.2e+04 -2.9 1.8 6 10 239 243 237 244 0.49

8 10 6.5e-05 0.93 10.2 9.2 9 18 256 265 254 266 0.92

9 10 1.4 1.9e+04 -3.6 0.8 15 18 292 296 291 297 0.54

10 10 4.2e-09 5.9e-05 23.6 10.2 1 16 302 317 302 318 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	6e-05	0.85	10.3	12.5	1	19	44	62	44	62	0.99
2	10	2.8e-06	0.04	14.6	11.4	1	19	103	125	103	125	0.88
3	10	0.76	1.1e+04	-2.8	1.7	6	10	155	159	155	159	0.95
4	10	0.0034	49	4.7	7.3	1	11	165	175	165	176	0.93
5	10	0.017	2.4e+02	2.5	1.2	4	10	180	186	179	186	0.93
6	10	8e-07	0.011	16.3	14.0	3	19	194	210	192	210	0.92
7	10	0.87	1.2e+04	-2.9	1.8	6	10	239	243	237	244	0.49
8	10	6.5e-05	0.93	10.2	9.2	9	18	256	265	254	266	0.92
9	10	1.4	1.9e+04	-3.6	0.8	15	18	292	296	291	297	0.54
10	10	4.2e-09	5.9e-05	23.6	10.2	1	16	302	317	302	318	0.96

Coding Sequence: ATGGACAGACCGACTCCGCTTCTTATATGCCACTGCCCAGCAGCCAGCGCCCGTCGCGTGCCCTGCACGTCGCGCACGGGCGGCGCGCTCGCGTGGTCGTGCAGCGCGGAGTGCGGGCGCGTGCTGGCGTGCGGCGCGCACGTGTGCCGCACCGCGTGCCACGCGCCGCCCTGTGCGCCGTGCCCGCTGAGGCCCGACAGCGTGAGGAGCTGTCCCTGTGGTGGTACTAGgaTTCATAAGGATCAACGGAAGTCATGCACAGACCCGATACCGCTGTGTGGTAACATTTGCACCAAGCCTTTGCCCTGTGGTCCTCCGGGGGACAAACATTTCTGTAAGGAAAGCTGTCATGATGGTGCGTGTCGCGTGTGTCCCGACTCAACGCTGCTACAGTGTCGTTGCGGACACTCCAGTCGAGAGGTGCCTTGTGCTGATCTACcagaaatgtataataatgtgTTCTGCCAGAGGAAATGTAATAAGAAGTTATCCTGCGGCCGTCATCGCTGTCGTACAGCATGCTGTGCGGCCGCGTCCCACCGCTGCACAGTTGTGTGCGGTCGCACATTATCCTGTCAACTGCACAGATGCGAGGAGTTCTGCCATACTGGGCATTGTGCACCGTGTCCCAGAGTTAGTTTCGAAGAGCTCCGTTGTGAGTGTGGTACAGAGGTCATCCTGCCCCCAGTCCGCTGCGGTACGAAGCCCCCGCCCTGCAGCGCCCCctgccgccgccgccgcgcctgCGACCACCCCCCGCACCACGCGTGCCACTCCGGGGACTGCCCGCCGTGCGTCGTGCTCACCACCAAGCGGTGCTACGGCGACCACGAGGAACGTAAAACAATACCATGTTCTCAAGAGCAGTTTTCATGCGGTCTACCTTGTGGAAAGCCGCTGCCTTGCGGGAAGCATACCTGTATTAAGAAATGTCACACGGGCCCTTGTGATACTGGCAA
Protein Sequence: MDRPTPLLICHCPAASARRVPCTSRTGGALAWSCSAECGRVLACGAHVCRTACHAPPCAPCPLRPDSVRSCPCGGTRIHKDQRKSCTDPIPLCGNICTKPLPCGPPGDKHFCKESCHDGACRVCPDSTLLQCRCGHSSREVPCADLPEMYNNVFCQRKCNKKLSCGRHRCRTACCAAASHRCTVVCGRTLSCQLHRCEEFCHTGHCAPCPRVSFEELRCECGTEVILPPVRCGTKPPPCSAPCRRRRACDHPPHHACHSGDCPPCVVLTTKRCYGDHEERKTIPCSQEQFSCGLPCGKPLPCGKHTCIKKCHTGPCDTG

Sequence clustering based on sequence similarity using MMseqs2