Hhew001452.1
Basic Information
- Insect
- Heliconius hewitsoni
- Gene Symbol
- -
- Assembly
- GCA_018230445.1
- Location
- DWAN01000736.1:4160-5731[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0048 0.39 11.9 0.5 3 23 40 60 38 60 0.96 2 11 0.00046 0.038 15.1 2.3 2 23 123 145 122 145 0.96 3 11 0.061 5 8.4 0.5 1 20 170 189 170 191 0.94 4 11 0.00071 0.058 14.5 2.1 1 20 234 253 234 257 0.90 5 11 0.13 10 7.4 0.7 2 23 329 352 328 352 0.93 6 11 0.00051 0.042 15.0 0.5 2 23 358 380 357 380 0.95 7 11 0.014 1.2 10.4 0.6 1 23 385 408 385 408 0.92 8 11 0.00076 0.062 14.4 2.2 1 23 413 436 413 436 0.95 9 11 2.3e-07 1.9e-05 25.5 5.7 1 23 440 463 440 463 0.97 10 11 0.00066 0.054 14.6 0.2 2 23 470 491 469 491 0.96 11 11 0.011 0.92 10.7 2.2 1 23 497 519 497 519 0.97
Sequence Information
- Coding Sequence
- ATGCAATCGGATGCTATCGAATGCTCTACTGCACTATCGGCGTCGCAGCGTCAATGtctccaaatattttttaacactacCACTATCATTCCTTTTGAATTAAACAACGGCCtcgcttgttttttttgtgcaaAACCGGTATCTCAATATGATGAtctcaaaaaacatacaaaatcacATGAAATAGGACAAGttttcaacaatatttattcaaaaataataaaggtaGATATATCTGATAGTAGTTGCGAAATTTGTGATATACAATCACATATGGATTACAATGGCCTGGTTAATCATTTAGCATCCGCTCATAATTTGAAAGatgatattagttttattaaatgtttcaatttaaaaagactACAATGTTTGGAATGTAGTCAGTGTTTTACAGAGTTATCTAAATTGGAAACCcacataaaaatgaaacataacGAAAGTTCTGTACACGTTCTGCGTAAATTGGATTCAGGACCAGTAATAAACAATTCGACAAAATACCACTTTTCTTGTCctaaatgtttcaaaatattaacttcGAAGTTGGgttttaaaatacatctaTCCAACTGTGGTGTTAAAAAAGAACCACGgttattaaaagaaagaaatactagaactttaaaaattagacAAAATATAGCGTCCGTTATTAAAATGTCCACTGCTATTCCTttcaaattctttaaaaataggtttcgctgtttttattgttcaaaAGATTTCAcagattttgataatttaaaagatcaCAATGTCAATGATCATCCTAATTTTAGTGAACATTGCAAAGCTATGAAAATGATTAAAGGTAGAGatgttaatgttaaaatagacATTTCAAATCTCACGTGCAAGCTTTGTTTTGAAAGTGCACTTGAATTGAATGACCTCATAAATcatctaattttaaatcatgaAATAAATTACGATAAATCCGTACATTGCCTACAATCTTATAGGAttgtaaaagataatattccTTGTCCGATTTGCCCACATACGATGtttaggtattttaaaaaacttttagaaCATATGAATGAGTTTCATTCGGATAACAATATTGTTTGCGCTCAATGTGGCTTAACATTTAGGGGCCACCCTAATTACCGCGCTCATATGTCCCGTTATCATAGAACTAAAGCTTGTAAATGTCCCGACTGTAATATGGAATTTTGGAATTTGGAAAAACTTGCCCGTCACAGAGCTAATGTACATggtacaaagaaatataagtgCACACAATGCGTAGAAAAATTTATCACTCAGCATCTTATGCGTAAACACCAAATTCTCGTGCATGGCTTTGGACATAAATGCCCCTATTGTGGAAAAATGTTCACACGCAATTCTCATATGAAAAATCACGTAAGACGTCTTCATTTGAAGGAGAAAAATGTCGAATGTACTGTTTGTCGTGAGAAATTCTTTGATAGAGCGCTTTTAAATGTTCACATGGTAAAACATGTGGGAGAACGAAACTATCATTGCGATGTTTGTGGCAAGAAATTCTTGTGGAAGAAGAATTTGCGCGGTCATATGTCTTCACATGAACGAAATATCTGA
- Protein Sequence
- MQSDAIECSTALSASQRQCLQIFFNTTTIIPFELNNGLACFFCAKPVSQYDDLKKHTKSHEIGQVFNNIYSKIIKVDISDSSCEICDIQSHMDYNGLVNHLASAHNLKDDISFIKCFNLKRLQCLECSQCFTELSKLETHIKMKHNESSVHVLRKLDSGPVINNSTKYHFSCPKCFKILTSKLGFKIHLSNCGVKKEPRLLKERNTRTLKIRQNIASVIKMSTAIPFKFFKNRFRCFYCSKDFTDFDNLKDHNVNDHPNFSEHCKAMKMIKGRDVNVKIDISNLTCKLCFESALELNDLINHLILNHEINYDKSVHCLQSYRIVKDNIPCPICPHTMFRYFKKLLEHMNEFHSDNNIVCAQCGLTFRGHPNYRAHMSRYHRTKACKCPDCNMEFWNLEKLARHRANVHGTKKYKCTQCVEKFITQHLMRKHQILVHGFGHKCPYCGKMFTRNSHMKNHVRRLHLKEKNVECTVCREKFFDRALLNVHMVKHVGERNYHCDVCGKKFLWKKNLRGHMSSHERNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00621500;
- 90% Identity
- iTF_00780513;
- 80% Identity
- -