Hhew001178.1
Basic Information
- Insect
- Heliconius hewitsoni
- Gene Symbol
- -
- Assembly
- GCA_018230445.1
- Location
- DWAN01000577.1:9866-15421[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3 2.5e+02 3.1 0.5 12 23 82 93 77 93 0.82 2 10 4.4e-05 0.0036 18.3 0.9 1 23 100 122 100 122 0.97 3 10 4.3 3.6e+02 2.6 0.1 1 9 126 134 126 141 0.82 4 10 4e-05 0.0033 18.4 0.5 2 23 154 176 153 176 0.96 5 10 0.001 0.083 14.0 0.6 1 23 185 207 185 207 0.96 6 10 0.0019 0.16 13.1 0.1 1 23 212 234 212 234 0.96 7 10 4.1 3.4e+02 2.7 0.1 6 22 245 261 245 265 0.92 8 10 2.1e-06 0.00017 22.4 0.3 1 23 270 293 270 293 0.98 9 10 1.5e-05 0.0012 19.8 1.1 1 23 354 376 354 376 0.97 10 10 0.00016 0.013 16.5 0.9 2 21 386 405 386 406 0.94
Sequence Information
- Coding Sequence
- atgtcTTCATTTTTGTGTTTCATTTGTCACAGTACTGTTAGTAAAGAGACGAACGAGGAGATTCGAGACAAATATCGCGAAGTGGTTGGcttgaatttAAGTCCTGACTCACAGTTGTGCTACATCTGCTGTCATGTTTTGAACAAGGTTTCTCTCTTCAGATCCATTTGTTTGAAACGGAGCTTAGAATATCCTGTGTtatttagaGAAAAAGGAACTTTGAATCTGCAAAAGAGATTTTTATTCAAAGATACTTATCAAGCTCACATGATGAGACATGAAGAgtcaAATGGCCAACACCAATGTGAAACATGTACACTACGTTTCTCTACACTTGCTTTATTAAGAGCTCATATGGCTAATCATAAAGAGATATATATTTGCACCAAATGTGGATTGAACCTACGACCCAGAGCCCAGAGAGGCCATAACTGTACAATAAAAGAAGTCGAAACAGTCTCTTGTCATTTGTGTGGGAATTTGTTTAAAGACGCCAGCGGCCTGCAGCAGCACATAAGGCGCGTCCACACGCGCAAGTGCAGCGGCCGCCTGCACTCGTGCGGCGCGTGTGGAGACGGCTTTAGTACGCAACGAGCTCTGAGGACGCATATGATCAAGCACGTGTCGCACACGTTCGCGTGTTCGCAGTGCGGCGCTCAGTTCCGCAGCCCGTACTCGCGTGCGGCGCACGAGCGCGAGCACGCGCGTGCCGGGCGGGCACACGCGTGCCCGTGCGGCGCGCTCTTCGCGTCCCGGAAGGGTCTAGTGGAGCATAGACGCAGGAGTGCCAGGCACCAGAGTGTCTTATTCGAATGTCCCATATGCGGTCGAATATGCCCCACACAACGTGCCCTTTCGTCACACATGCAGACTATACACGGGGGACATGGAGTACAATTGGATACGGGCGTACCAGTGAACACCGGAGTACAATTGGACACAAGAGTACATTTGGACACTGGGGTACAAATGGACACTGGGGTACAAATGGACACTGGGGTACAAATGGACACGGGAATACAAACAGACAACGAGGTCCAAGGGGTGCAAATACAAGCACACACTTGTCCATTATGTCCCGCGCGTTATACTACAAGGAAGTCATTATTGAGGCACATTAGAGGTCACAGTGGAAAATCTGATGTCAAGATGGCGGTGTGTCATTTATGTGGGAATAGTTTTAAGGGTAACAGTAAACTAAATAGACATTTGAAGGAAGTTTGTGAAAAAGCGAAACTTGAAGAAGAAATATCagctttatatgaataa
- Protein Sequence
- MSSFLCFICHSTVSKETNEEIRDKYREVVGLNLSPDSQLCYICCHVLNKVSLFRSICLKRSLEYPVLFREKGTLNLQKRFLFKDTYQAHMMRHEESNGQHQCETCTLRFSTLALLRAHMANHKEIYICTKCGLNLRPRAQRGHNCTIKEVETVSCHLCGNLFKDASGLQQHIRRVHTRKCSGRLHSCGACGDGFSTQRALRTHMIKHVSHTFACSQCGAQFRSPYSRAAHEREHARAGRAHACPCGALFASRKGLVEHRRRSARHQSVLFECPICGRICPTQRALSSHMQTIHGGHGVQLDTGVPVNTGVQLDTRVHLDTGVQMDTGVQMDTGVQMDTGIQTDNEVQGVQIQAHTCPLCPARYTTRKSLLRHIRGHSGKSDVKMAVCHLCGNSFKGNSKLNRHLKEVCEKAKLEEEISALYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -