Hhew006594.1
Basic Information
- Insect
- Heliconius hewitsoni
- Gene Symbol
- -
- Assembly
- GCA_018230445.1
- Location
- DWAN01005010.1:8154-10929[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0018 0.15 13.2 4.1 1 23 158 181 158 181 0.98 2 17 0.00014 0.011 16.8 2.1 1 23 190 213 190 213 0.97 3 17 0.017 1.4 10.2 0.3 2 23 226 248 226 248 0.97 4 17 0.00052 0.043 14.9 1.3 1 23 257 280 257 280 0.97 5 17 3.9e-05 0.0032 18.5 1.3 1 23 292 315 292 315 0.97 6 17 1.3e-05 0.001 20.0 0.7 2 23 343 365 342 365 0.97 7 17 0.00041 0.034 15.2 1.3 2 23 375 397 374 397 0.96 8 17 0.029 2.4 9.4 1.1 2 19 402 419 401 422 0.92 9 17 0.0017 0.14 13.3 3.5 2 21 427 446 426 449 0.94 10 17 0.012 0.95 10.7 1.3 2 23 458 480 457 480 0.94 11 17 0.0018 0.15 13.2 2.9 1 23 485 508 485 508 0.96 12 17 0.00011 0.0088 17.1 0.5 2 23 519 541 518 541 0.96 13 17 0.00062 0.051 14.7 0.6 1 23 567 590 567 590 0.92 14 17 0.0018 0.15 13.2 0.9 2 23 624 645 623 645 0.97 15 17 1.6 1.3e+02 4.0 0.5 3 23 653 675 651 675 0.91 16 17 0.015 1.2 10.3 0.2 1 23 711 733 711 733 0.97 17 17 0.19 15 6.9 2.0 1 23 739 762 739 762 0.96
Sequence Information
- Coding Sequence
- atgtcaataaaagaagataaaataaacattagcaATGTTAAAGCAGGTAAAGATGATGATAGTAGAAAGGACCCAACTTCATTCCTTCCTGATGAACCTATgacatatgaattaaaaacaaagaaaaagaaaaaaaagaaaaaacaagagGACCcatttaaagatattgaagAGAAAGTCACATTGCCTATAACAACAGTATTTGAATCTACAACAGAAAGTGAAGTGGATACAAAGCAAGTGCTGGACCcagaagttaatataaaagtggAAAATATTGAAGTTGAACTGGATTTTaatgatttTGCAAATGACAATGGACTGATGTTAGAAGGTCCACAAAGTGAAGATAGTCAAGAACCAGTAGTCAAAATCGAAGAACAAAACCGCGAAGCAGTGTTACTTACTTTTGAAAGCATTATAAGTGATAAAAGTGTGATAGGTTTCGGGCCTATCGCGCCAGCACCCAACTACGTCTGCAAAGTTTGTCATTTGGTGTTCCAATCAACGAAAACATTAAGAATGcatcaaaaaagaaaacacaaaGTATTTCGGAAATCCTTCAAATATATATGCCATTATTGCTCTATGTCATACGAACAGAAGAATAGCTTGGTTGcccatataaaaagaaaacatggaCCTGATTCGTCAAATGATGATGGTGAAGAAAGAACCTGTGAAATTTGTGCTTTAGTTTTCAAAGGAATTGCCCGATTAAGAATGCATATGCGGAGAAAGCATGGTTCTTTTGAAGATTCGTTCAAACATGTATGCAAAGAATGCGGTTTaacatatgataaatatagaaGTCTAATAGTTCACATACAAAGGAAGCATTCGATTGATAAAAAACCAGTGCTAGACCAGTGGTACAATTGTCCATTTTGCCCGAAAGTTTTTACGAAAAGAGAAACTTATGCAAGACATGTGCAAAGAAAACATCGTGTTAACGACGAAGATGAAGTCAAAGAAGAATCGGGAACTTTactcgaaaatataaaaaatgaaactacAGGTGAAATAACGTGTAAAGAGTGTCCATTAGTGTTTTCGTCGCTCAATTACTTAAAACTACATATGAGAAGAAAGCATAATGCCCTAAAAGAAGATTTTCGTCTGAAATGTCGAATTTGCAACTTGTCatatgataaaattgaaaGTTTAAAACGGCATATACGACGAAAACACGACAAAGGGTCGTATTGTGACGTGTGCGATAAACAATTCGAAACTAGAGAAACTTATCTAAATCATAGTCATAAGAGAATGGTCCAAGAGTGCCATATTTGCGGTCTCATATTCGCTTCACAAGGCGGTTTGTGCAAACATTTAAGATGTACACACAAAATACAGTCCCCCAAAACAATTGTGTGCAATCTGTGCAATGAAACATTTCACGATAAACGACAGTTAAAACCACATTACTTAAAAGTCCATTTAAAAGTGTCATACACATGCGCCTTTTGCCACAAAATCTTTAAAGCTAAAGAAAGTTATAGAAGAcacgttttaataaaacatccgTCAAATACTATGAAAATTAACGAACAACAGTGTGATAAATGTCCAGAGAAGTTTCCAGATGAATTTGAATTATGCCGCCACATTAATATAGCACACGGGATAATCCAAAACGGTGAAACGGGGAATGAGttgttggaaataaaaaaagaggaaATAGACATTCCAGATACGTTCCAATGTTCGAAATGtccagaaaattataatagctgGGATGAATTGAAATTACATTTCGAACAAAATCACCTTATGGTAGCAGTGACGCAGTGCCAAGTGTGTGGTGAAATGGTTCCTGGAAACGAACTAGATAAGCATTTTAAGAGTTTTCACACAATAACTTCAGTTCAATGCAAATATTGTGAATTCGAAACGTCCAATCGTGCTAGTATGACACAACACATGTTGCGACACAAAAATGCACACACGCTAAACTGCGATTTCCCCGGCTGTAgatacaaaacatattatgaaGGTGCTATGGAGAAACACAAAAGAAAGCACAGAGACCAAGGTGTCAAGTTACAATGTACGCAGTGTCCATTCCAAACAATGAAtaagtatatacttaaatatcatGAAGAAGCCCATGTTACAGGAAAAAAGAGATATTCTTGCGATCAGTGTGATTATGCAACAATACTTCCAGCTAATTTGGTTCAgcacaaatataaacattcatcAGAAAAGAGATTCAAATGTGAAGTCTGTCCGTTCGCAACTAAGTACAACACGTCATTACGTTTTCACGTTAAAAAGAAACACTGTGATCTCCCAACATTCAGTTAa
- Protein Sequence
- MSIKEDKINISNVKAGKDDDSRKDPTSFLPDEPMTYELKTKKKKKKKKQEDPFKDIEEKVTLPITTVFESTTESEVDTKQVLDPEVNIKVENIEVELDFNDFANDNGLMLEGPQSEDSQEPVVKIEEQNREAVLLTFESIISDKSVIGFGPIAPAPNYVCKVCHLVFQSTKTLRMHQKRKHKVFRKSFKYICHYCSMSYEQKNSLVAHIKRKHGPDSSNDDGEERTCEICALVFKGIARLRMHMRRKHGSFEDSFKHVCKECGLTYDKYRSLIVHIQRKHSIDKKPVLDQWYNCPFCPKVFTKRETYARHVQRKHRVNDEDEVKEESGTLLENIKNETTGEITCKECPLVFSSLNYLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHIRRKHDKGSYCDVCDKQFETRETYLNHSHKRMVQECHICGLIFASQGGLCKHLRCTHKIQSPKTIVCNLCNETFHDKRQLKPHYLKVHLKVSYTCAFCHKIFKAKESYRRHVLIKHPSNTMKINEQQCDKCPEKFPDEFELCRHINIAHGIIQNGETGNELLEIKKEEIDIPDTFQCSKCPENYNSWDELKLHFEQNHLMVAVTQCQVCGEMVPGNELDKHFKSFHTITSVQCKYCEFETSNRASMTQHMLRHKNAHTLNCDFPGCRYKTYYEGAMEKHKRKHRDQGVKLQCTQCPFQTMNKYILKYHEEAHVTGKKRYSCDQCDYATILPANLVQHKYKHSSEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01033959;
- 90% Identity
- iTF_00457407;
- 80% Identity
- iTF_00776183;