Hhew017446.1
Basic Information
- Insect
- Heliconius hewitsoni
- Gene Symbol
- -
- Assembly
- GCA_018230445.1
- Location
- DWAN01022729.1:1-1165[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.5e-06 0.00012 22.9 0.8 1 23 15 37 15 37 0.97 2 10 0.00014 0.011 16.7 5.5 1 23 42 64 42 64 0.99 3 10 1.3e-08 1.1e-06 29.4 1.9 1 23 70 92 70 92 0.99 4 10 0.00033 0.027 15.6 0.5 1 21 98 118 98 119 0.95 5 10 1.8e-06 0.00014 22.7 1.4 2 23 131 152 130 152 0.97 6 10 6.9e-06 0.00057 20.8 0.9 1 23 158 180 158 180 0.97 7 10 9.9e-05 0.0082 17.2 2.4 1 23 186 208 186 208 0.98 8 10 0.00071 0.058 14.5 6.4 1 20 214 233 214 236 0.95 9 10 1.9e-06 0.00016 22.6 0.9 2 23 243 264 242 264 0.97 10 10 2.9e-05 0.0024 18.9 2.3 1 23 270 293 270 293 0.96
Sequence Information
- Coding Sequence
- TCTGAAGAAATACTAAATCTAAACTCGACTAAAGACGGTAAATTCATGTGTCCAATGTGTTACAAGAGGTTTGCGAGCAAATCCAACGTACAACGgcacattttattacatacgcGTGAAAAATACGAATGTAAAACGTGTTTCCGTCAATTCGTTAACCCCCACCATTATGAAAGACACTTGTTAACCCATTCAACGGAAAAACGGTACAAATGCGACGACTGTGGCAAATTGTTTCGAACTGCCTCCAATTTGAAACAACACAAAAGAACCCATTGGGTCGTTAAACCATTTGAATGTGAACAGTGTGAACGTAAATTCGACCTGaaagctaatttattaaaacatcaaaGTAGAGGTAATTGTAAAAAACCGAACGAAGAACCGATCGTATGCACTATATGTGATAAAACGTTcaaaaaagagtttttattgaaaagtcATTTACGGAAACACACAACGGAAAGGCCGTTCGTCTGTGATAAATGTCAAATGGCCTTCAAATACAAGTCTACTCTAATTCGGCACGTTCAACTCCATAACGGGATTAAGCCCTATTCTTGTAAGATATGCCGAAAGACTTTCACTCATGCCGGCCTCATTAAGCCTCATATGAGGCGGCATACTGGTGAAAAACCTTATAAATGCCCAGTCTGTAATAAACTATTCGCTCACAAGCATAATATGCAACGACATACATTATGCCatgcgaaaaaaaaacatctagtTTGTGATGTATGCAACAAAACCTTCCCTAAAGAAAGTcggttaaaatatcatatgagGACTCATACTAAAGCGAAACCGTTTATTTGTGGGGTTTGCCCAAAGACTTTTTCCCATAGACAGAATATTATTCGACATTATAACAGGAAGCATCCAAATGAAACCTACAATTGTAAAGATACAGACGCAAGTGTCGCTAAAGATGTATGGGAAAGAGTAAAGAATCAAGATTTGGAAATAAAGGTTGACTTCtgtgaagttaaaattgaGATTTCTGATCATAGTGACGATGAAAATTTggcgaatattaaaaaatga
- Protein Sequence
- SEEILNLNSTKDGKFMCPMCYKRFASKSNVQRHILLHTREKYECKTCFRQFVNPHHYERHLLTHSTEKRYKCDDCGKLFRTASNLKQHKRTHWVVKPFECEQCERKFDLKANLLKHQSRGNCKKPNEEPIVCTICDKTFKKEFLLKSHLRKHTTERPFVCDKCQMAFKYKSTLIRHVQLHNGIKPYSCKICRKTFTHAGLIKPHMRRHTGEKPYKCPVCNKLFAHKHNMQRHTLCHAKKKHLVCDVCNKTFPKESRLKYHMRTHTKAKPFICGVCPKTFSHRQNIIRHYNRKHPNETYNCKDTDASVAKDVWERVKNQDLEIKVDFCEVKIEISDHSDDENLANIKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01182052;
- 90% Identity
- iTF_00776176;
- 80% Identity
- -