Hher003546.1
Basic Information
- Insect
- Heliconius hermathena
- Gene Symbol
- -
- Assembly
- GCA_013403705.1
- Location
- JAAIXJ010000088.1:598631-607698[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.68 48 4.9 0.2 2 21 1591 1610 1590 1611 0.87 2 7 6.9e-05 0.0048 17.4 1.2 2 23 1718 1739 1717 1739 0.95 3 7 0.0016 0.11 13.1 4.1 1 23 1758 1780 1758 1780 0.97 4 7 0.0044 0.31 11.7 4.2 1 23 1819 1841 1819 1841 0.98 5 7 0.023 1.6 9.5 2.9 1 23 1864 1886 1864 1886 0.94 6 7 0.017 1.2 9.9 0.5 1 20 1910 1929 1910 1931 0.94 7 7 0.49 34 5.3 0.8 5 23 2254 2273 2251 2273 0.90
Sequence Information
- Coding Sequence
- ATGGATAAACTAATTGATATACAAAATGAGGCGGGAAGCTCGCGAGATTTGACGCTGGACACTTCTTCACCGCCAAGTGAATCTTTTATGACGGCTAATGAGAGttcgtcaaaatatttttctctttccGAAGTAGATTCTACACTTGGAATATCCCCCTCGAAGGACACATTAACGTCAAACACTGATACGGATTGCACACTAACAACTAACTCCGATTTGTTAGCCAACTTATCTCCGATCCCGAAAAAAGGTGATTTAGATAGTTATAGTATTGGTAAACAAATAGAAGCTGCTAATATTTTGTCAGGTggtgttaatatttttgatgataATGAAAATTCTTATGATGAAAGTGAGCTTGTTATAGATGATAATGTTGCTGTCGAAGAAGAAAAACCTATTGAGAAATTGGATGACAGTACTATTCTCGAGAAAACGGCGGGAAGTTTCGACGGTAGCAACTTAGAAGCCTCCGAAGTGATAAAAAGTAAGGAAACTGAAGTGGTACTACACATAGACGGGAAGAATGTTGATGCAATAGATATTGGTAATggattatatttgtatagaaaagCTGGTGAGGAAGAACTTGGTGCTGTTCAGATTATTGATGATGATCAACAACAGCCAagctttaagtttttaaaagtgCGAGAAAACACTGAAGGAAATTTAGAAGTTtatgaagaaattgaaatagaaGTTCCAAAAGAAGTGatttCCAGGGAAACAAAAAACGCTGAAAGTACATCTCATGTGCCTATTAAGGATATAAACAAAGTGATAAATGAGCCTTCATCAAATAAATTAagtgataaaataaatgtagcgacaaaaaatgatataaacaaCTTGGCCAATGAAGTCAGCATTGAACTTGCACTTGATATTTTGTCAGAACCAAAATctgatttgaatttaaatggaaaaatgaagaaatttaaTGAATCTCGTAAGTCACCTGTTATTGGCTCATTCACTCCAATGACATATCATTCTACGCCCAATAAAGAGGGCATACCGCTAACAAAAGTTATGGTCGACCAACAGTTGCATCCCAGTAGACATTcggataatgtaaaaaaaactatagaggTTTGCACAGATAGCGGCAGACAAAAAGTGTCCGAAACAtccgtaaaaaataaagatgctACAGAAATAATTAAACCAGATACTATATTTGGAATTGAGGCTGTTAAAGAACATGTAAAAGATATAAGGGAATTAGATATCAGCGTAAATACTAAGGATATCGGAAAAAGTACAGAAACAGGAGCTAATGATGATGATGCTAATAAAGATAGTATTAAATGTCAAGAATctcttgaaattaaaaataaaatggagcAGGATACTGTTTTGTCTCAAGAAGAACCTAAACATAATCTAGAAGATAATGTAAAAGTTGTCTCACGtgaggaatttaaaaaaagtcctcCTAAATACAATGATAATGTTGAGAATGTTCAAGATATatcattaaatgataaaattaacttaaatccAAATTCAGAAAAACAGAAAAATGAAGAAGATGATGTTATTGCAAATAAAGAAATTCAAGTTCTCAACGTTAATAAAAATGAGAAAACTGAGCTCGTTACGgaaaatataaaggaaaacaTTATTGGAATAGATAGTACTTCACTCAAAgatgaaataataattgtggATAACGAAAAAAGGAATGAAGAACACATTAAAGGACCTGCAGTTAAGAAAGAAAAGAACATTAATTTGCAAGACTGTGAAGTGATTGATATATCTGATGAAGATTCATCACTAAGAAACTCCATTGAAGAATCGAATTTAGTTATTGATGatgaagttataaatattacagaCAGTATAGTGGAAATAGAAAATACTTTAGAtgactttagtaaaaaaaaagtaatcgcTGAAGATACGGTGGATACTATGTTAGAAAGCGTAAAAGAAAATGAACATTTGaaggaaaaatctaaaaatgacGAGACAGGCAAGGACTccaacaatgaaaatataataaacattccaaaacataaaaataatgataaaattgaaGTAGCCAAAATAGATCCTACTGTTAATAATAGTGGTATTGGACTACTACCACTTCCAATACCTTTAAAGGATTGTAAAGTTAGTTCTCAGAAAATGTCAGTTTCTCCTAAGAGCAAAAATGAATGTGTTGATATAGATCACCTTAATGATGATATAAAAGCGAAATCTCAGGGACTTGTTGAAACTGACGAATCTGaagttgatattaaaaaatgtaatcttgAATTCAGTAAATCTGACCCTTTTATTATGAAATCcgtatgtgaaattaaaaaaaatcatcctcAAATTAAACAATCAGATCTTGAAATTAGAAAAACTGATTCTGAAATAATACAATCTGaacttgaaattgaaaaatctgttccagaaataaaaaagtgtgaCGCTGAAGTCATAAAAAGCGATGCagcaactaataaaaataataaaatcgttaatTCAATGGAAAGTTGTAATGTTGTTCCAGAAAAACCAAATCCATACAATTTAAAACAAGAAAAGCAATTTGTGTCTCCAAAAGAGGCGGTAAATATTGCATCATGTCCAGTTAATAAAGAAGCAAATTTGATACGTAAAGATTCTAATGTAACGGAAGTTAAAAATCataacaatcaaaatatttgtataaaatcttTAGTAGATAgaaataaagttgaaaaaaataatgatgttCCAAAAAAGGCTGCcccaaaatcaaatattaataacaacagcGCTGTTCCTTTTGGAAAATGGACAGAAGCCAATAGACaagagtttttaaataaaataaaggaaacaaAAGTACCGTCGACTAATACTAACAAGCAATTAAAACAACCAAATGATTTAAATAGAAgagatattttaaagaaaattgataGTCAAAGACACACAACCACTGTAAATACTAAAAATGATTTTGGTTCGtctaaaataaacactaagAAAGAATCaacagtatttttaaataaaaatcataatgcCCCAACCAATATACAGGAACCGAAGGTTACGGTAAAAACACAACAACCATTGACTAAACCGAAACCAGTTATACCTAAAAAGGTACAAACTGATGAATCACAAATTTTTATTCCAGTAATGAATAATCAAGATTTAATTGATATAACTGTTGAAGGTATTATCAACAGACCAATTGTTGGCAAGCCATTAGATACAGTAACAGATAAATCTTCGACATCAGATAAACAAGAAAACTCTAAAGCTCCGATGGAcgatattgaaatgaaaatgaatgaaCTACACGGCATGTCAagtgatgataaaataaattcttctgAAATCgtacaaaatatcaataatgaTAATCAACAATCAATAAATACAACATACTCAAAAAAAGATACTAAAGGTGCTAAAAGTAGCAAAATACCCAGTTTAATACCATTTAAGAATAAAGACCACCCAAACGTTAAAGAGAATGTTGCAGAAGAACCTTCAGATGAAGAAATTATAGAACATGAACCAATAACGGGAGATATAGACGTTAACCGCCAAAATCTAATGTGTTTGTTGTCGGGCAAAGAAAAAGTTTCCGAAAACAGAAAAGAAGCAATAATCACGGAAAAGGATTTTGACAAGTTTGCTAGACGTAATTCTATAACTTACGAAAATCGATTGACGGTTAATTTTGATGGGAAAGAGCCTCATAATGTTATACAAACTGTAGTCGAAAAGGAGCCACCGGTTAAAAAATTATCTAGGAATGAGATGATGCTGGCTGAGTCAAAAGCAAAATCAACTAATAAACAACAAATTGCAATGAGGCACAATCAATCGAGTAAAATACCTATGAACGTGAAAACTGTAAATGAAGAAGatgcatttaataaaaactatcagTCTAAAGTTCAAATAGCATATCAGTCTGCGTTGACAGCCAAGAAACACTTAGAATCCCCCATTCCTATAATAGAAGATAAACCAGTTCAAGTGGTTTATATGGATTCCAATATGGAGTTCCCCTCTGTACAGCTGAATGTGCAAGGCCAAGATTTGTCACcatctaaaaaaattacatctgaACCTGATATAGTAAATAGTGCTTCTGAATCTCTTGATTCTGATGTAGTACAATCTAATTTAGAAATAAGGGCAGATGATACAAAATCGAAAAGTAAACATCAGAGAAAGCAAGTGTTGACTCCCGTTGAAGAACCCGAATTAGAATTAATTGAGCCTAGTGATTTAGGAATTGAAACGTCACCTAAAAAGAAACGTAAATTAGAAGACAAGGGCgagaaaataactaagagtCTCGTGCCAAAGAAAAACTATTTACTGAATCGCAACGTTATTGAAGATAAAAGTACAAATTCTCAAGAAACATTGAAAATCCCTGTCAAGGAACCTGAAATTGTCAGCGAAACGTATACAAATCATACGGTCGCTATATCTGCGTTGGATAATTTAGTTAAAGCGGCAGAATTGATTGAAAATCAATCGGAACATAATAACTCTTTATCAAGTGTTCGTTCAACGGATAGTCCCGTAACTACTCCTGTTAAAAGAGGTAGAGGTCGTCCAAGGAAATACCCGTTGCCTGAGTCAGGACCTGAAAGAAACAAAGTTCCTAGTCCTCAAAAAAAACCGCGCTTAATAGACGCAAAACCTCCAAAGAAAGAACTAGATAATTACACAGATTCAGATGAAAGCAGTAACGGGGAGATTGTGAAAGAAAATTGGACAATGGGcaaaattaatgaaaacattGTTTGTCCAATTTGTACAAAACTGTTTAGATCCGAAAATGTAGTATTCAAACATGTTAAGCATTGCACTGGCCCTTCTCCCAATAGATCTGACTCTGATAAGAGAAGTCCGAGAATGTACAGACGAGACGATTCACGTGACTCTGAGATGAATTCGATAGATAGTGATACAGATACTACGGACGATGAGGAAGAAAAAGTTAGACGTCGCAAAACGaattacaaaatttctaaaACTATAAATGATAATGACGATGTCATAATCATTGATGATACGCCATTGAAAGAGAGAATAGAAAAGAATTTGCAAAAAACAAAAGTTCCTGAAGCTAAGAAAACTGTAACAAAAGCGAAGAGTAATTTTAATAGATCAAGTAATCTAACTTGTGAATTCTGTGGAAAAACATTTAGACAGCTATCATATTTAGTGAACCACAAATTGCAGCATAAAAAAGAGATTAGGAATcaggaaagtgaagaacaggcAACAAGTAGATCTGTTTTCAGTTGCGAAGTTTGTAAAAAAGAATTTAGAAAACTTCACCACTTAGTTCAGCATAGAATTATACATAATCCGACTTCAATGAGTCATAGGTCATTGAGAAAAAGTTCTTCTGAGCAACGTGATAATAAACCATTGAAAAATCCATCCGATTCGAAACATGCTGATGATACCAGTGCAGGTTTTCGATGTGAACCTTGCGACAAATCATTCAGAAAATTACATCATCTCGTAGAGCACAGAGAAACACATGATGGTATCAACAAAAAAGGTTCTAATACACAAAGTTCCAATGAAATTACTAATAAACTAGTAACATATAATTGTGATAAGTGtaagaaaagttttaaaaaattacaggaTTATTTGGAACATAAAGATCAACATTTAGAAACTAGCTCTGAAAAGTCTGATGATAAGAGCGTAAAGAGCTCGCTGTCAACTAAAGATATCATTCATGAGTGTTCTCTTTGCTACATGGTGTTCCCTAATGAACATTCTTTAAACAAGCATACTGTCATTTgcttaagaaaaaagaaacaatcaGCAGCTAAACAAGCAGCAAAGCAAAGTGAAAACAAAGAAACTACAGATACAGAAGAACCTATGACGGATGATACGAAAGATGAAGAATCTAATAAACCAAGTGATGAAGAATATAACAAACCAAGCGATGAAGTAAAAATCTGTGATACTGTACTATTAAAACCCGAAACTGTGGAAATTATAGAAACAGAAAAAACACCAGTTATCATTGAAAAAGAAACAGAAAGTACaaagaaaatagaaagaaaGAATAGTTCCACGGAGAGAAGACCTagcgaaaaagaaataaaaccagAAAAAAGAAGCAACCCTGAAACTGAAAAAGCAAACACTAATCTTGACGATTGCGAAAcaccaattaaaattaaaaaaatcgaacaaGTGaagaatataataactatttctgATAGCCCTGTGCCTAAAAAGAGAACACcatcaaaagaaaaaagtagTGCAACTGTTACTAAACGACAAAAATCTATAAACGCCCCGCTGCCAGTTGTCGACGAAGCGACTCATTTGGAATCTACAGACGAAGATGAAATACGATACATGCTAAATCCAAATTTTAAAGGAGAAGAAAGCACCGAAagcaaattatttatgaaagtgAATGCCAAAAAACGTAATTCACTGCAAATAGAACGACCTAACTCAAAAGACTTAATGAAACGAAGAATTTCATTACAACATCCGCCTAAAATACCGCGATTAAAAGCGAAGGCAATAGAAGCCCGGCCGATTAATTCTCTCGCTGTTGAGAAAAAGTTAAAGATGGCCGTCGCAAAACCATTATCGCCTATAGATTCTGACGATAGTGATGTAAAATATTCATTCCCAAAATCAGAGAAAGATGAGGTGGAAAATGTGgagaaaaaagttaaaaagacGTTGGCCGACAAACGGAAATCACTCAGCACAACAGAGATCGAACACCGGTGTGACTGCGGACAATTGTTCAGTAGTGCAGCACTACTTTCTCGACATACAACCCTCGCGCATACACCCCCTCGGATACGACGACGACGTTCCCCACCACCCCCTTCCCCTTCACCTCCCAAGGCTGACCCCCCGAGGGTAAAGCCCAAACAGACAACCGTTCAAAAAAAGCTCAAAACTAATATTACCTTGAATAAACCTAAACCTAAAACTCCTATTACAAAGTCAAGTGCGAGTGAAAAAAGTGCTAGTGATGCCCCAAATGTTGAATTCGTTGGCAAAAAGCTTAGGAGTTCCGCGCACAGGGGAGTCCCCCTACCGGACAAGATGAGAAAGATCGTAGAtaagttaaaaaagtaa
- Protein Sequence
- MDKLIDIQNEAGSSRDLTLDTSSPPSESFMTANESSSKYFSLSEVDSTLGISPSKDTLTSNTDTDCTLTTNSDLLANLSPIPKKGDLDSYSIGKQIEAANILSGGVNIFDDNENSYDESELVIDDNVAVEEEKPIEKLDDSTILEKTAGSFDGSNLEASEVIKSKETEVVLHIDGKNVDAIDIGNGLYLYRKAGEEELGAVQIIDDDQQQPSFKFLKVRENTEGNLEVYEEIEIEVPKEVISRETKNAESTSHVPIKDINKVINEPSSNKLSDKINVATKNDINNLANEVSIELALDILSEPKSDLNLNGKMKKFNESRKSPVIGSFTPMTYHSTPNKEGIPLTKVMVDQQLHPSRHSDNVKKTIEVCTDSGRQKVSETSVKNKDATEIIKPDTIFGIEAVKEHVKDIRELDISVNTKDIGKSTETGANDDDANKDSIKCQESLEIKNKMEQDTVLSQEEPKHNLEDNVKVVSREEFKKSPPKYNDNVENVQDISLNDKINLNPNSEKQKNEEDDVIANKEIQVLNVNKNEKTELVTENIKENIIGIDSTSLKDEIIIVDNEKRNEEHIKGPAVKKEKNINLQDCEVIDISDEDSSLRNSIEESNLVIDDEVINITDSIVEIENTLDDFSKKKVIAEDTVDTMLESVKENEHLKEKSKNDETGKDSNNENIINIPKHKNNDKIEVAKIDPTVNNSGIGLLPLPIPLKDCKVSSQKMSVSPKSKNECVDIDHLNDDIKAKSQGLVETDESEVDIKKCNLEFSKSDPFIMKSVCEIKKNHPQIKQSDLEIRKTDSEIIQSELEIEKSVPEIKKCDAEVIKSDAATNKNNKIVNSMESCNVVPEKPNPYNLKQEKQFVSPKEAVNIASCPVNKEANLIRKDSNVTEVKNHNNQNICIKSLVDRNKVEKNNDVPKKAAPKSNINNNSAVPFGKWTEANRQEFLNKIKETKVPSTNTNKQLKQPNDLNRRDILKKIDSQRHTTTVNTKNDFGSSKINTKKESTVFLNKNHNAPTNIQEPKVTVKTQQPLTKPKPVIPKKVQTDESQIFIPVMNNQDLIDITVEGIINRPIVGKPLDTVTDKSSTSDKQENSKAPMDDIEMKMNELHGMSSDDKINSSEIVQNINNDNQQSINTTYSKKDTKGAKSSKIPSLIPFKNKDHPNVKENVAEEPSDEEIIEHEPITGDIDVNRQNLMCLLSGKEKVSENRKEAIITEKDFDKFARRNSITYENRLTVNFDGKEPHNVIQTVVEKEPPVKKLSRNEMMLAESKAKSTNKQQIAMRHNQSSKIPMNVKTVNEEDAFNKNYQSKVQIAYQSALTAKKHLESPIPIIEDKPVQVVYMDSNMEFPSVQLNVQGQDLSPSKKITSEPDIVNSASESLDSDVVQSNLEIRADDTKSKSKHQRKQVLTPVEEPELELIEPSDLGIETSPKKKRKLEDKGEKITKSLVPKKNYLLNRNVIEDKSTNSQETLKIPVKEPEIVSETYTNHTVAISALDNLVKAAELIENQSEHNNSLSSVRSTDSPVTTPVKRGRGRPRKYPLPESGPERNKVPSPQKKPRLIDAKPPKKELDNYTDSDESSNGEIVKENWTMGKINENIVCPICTKLFRSENVVFKHVKHCTGPSPNRSDSDKRSPRMYRRDDSRDSEMNSIDSDTDTTDDEEEKVRRRKTNYKISKTINDNDDVIIIDDTPLKERIEKNLQKTKVPEAKKTVTKAKSNFNRSSNLTCEFCGKTFRQLSYLVNHKLQHKKEIRNQESEEQATSRSVFSCEVCKKEFRKLHHLVQHRIIHNPTSMSHRSLRKSSSEQRDNKPLKNPSDSKHADDTSAGFRCEPCDKSFRKLHHLVEHRETHDGINKKGSNTQSSNEITNKLVTYNCDKCKKSFKKLQDYLEHKDQHLETSSEKSDDKSVKSSLSTKDIIHECSLCYMVFPNEHSLNKHTVICLRKKKQSAAKQAAKQSENKETTDTEEPMTDDTKDEESNKPSDEEYNKPSDEVKICDTVLLKPETVEIIETEKTPVIIEKETESTKKIERKNSSTERRPSEKEIKPEKRSNPETEKANTNLDDCETPIKIKKIEQVKNIITISDSPVPKKRTPSKEKSSATVTKRQKSINAPLPVVDEATHLESTDEDEIRYMLNPNFKGEESTESKLFMKVNAKKRNSLQIERPNSKDLMKRRISLQHPPKIPRLKAKAIEARPINSLAVEKKLKMAVAKPLSPIDSDDSDVKYSFPKSEKDEVENVEKKVKKTLADKRKSLSTTEIEHRCDCGQLFSSAALLSRHTTLAHTPPRIRRRRSPPPPSPSPPKADPPRVKPKQTTVQKKLKTNITLNKPKPKTPITKSSASEKSASDAPNVEFVGKKLRSSAHRGVPLPDKMRKIVDKLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00779883;
- 90% Identity
- iTF_00779883;
- 80% Identity
- -