Basic Information

Insect: Heliconius hermathena
Gene Symbol: -
Assembly: GCA_013403705.1
Location: JAAIXJ010000582.1:63985-69031[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.012 0.84 10.4 1.2 1 23 296 319 296 319 0.92

2 12 0.00017 0.012 16.2 0.6 1 23 336 358 336 358 0.96

3 12 8.1e-06 0.00057 20.4 3.4 2 23 364 385 363 385 0.97

4 12 0.00061 0.043 14.5 4.6 1 23 389 412 389 412 0.96

5 12 0.003 0.21 12.3 0.8 1 23 415 437 415 437 0.97

6 12 0.00029 0.021 15.5 0.3 2 23 520 541 519 541 0.96

7 12 0.065 4.6 8.1 0.3 2 23 561 583 560 583 0.96

8 12 8.2e-07 5.8e-05 23.5 4.1 1 23 589 611 589 611 0.98

9 12 0.0013 0.095 13.4 4.5 1 23 616 638 616 638 0.97

10 12 0.0062 0.44 11.3 4.4 2 21 645 664 644 667 0.94

11 12 2.2 1.5e+02 3.3 1.5 1 19 674 692 674 693 0.88

12 12 0.043 3 8.6 2.4 3 19 706 722 705 727 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.012	0.84	10.4	1.2	1	23	296	319	296	319	0.92
2	12	0.00017	0.012	16.2	0.6	1	23	336	358	336	358	0.96
3	12	8.1e-06	0.00057	20.4	3.4	2	23	364	385	363	385	0.97
4	12	0.00061	0.043	14.5	4.6	1	23	389	412	389	412	0.96
5	12	0.003	0.21	12.3	0.8	1	23	415	437	415	437	0.97
6	12	0.00029	0.021	15.5	0.3	2	23	520	541	519	541	0.96
7	12	0.065	4.6	8.1	0.3	2	23	561	583	560	583	0.96
8	12	8.2e-07	5.8e-05	23.5	4.1	1	23	589	611	589	611	0.98
9	12	0.0013	0.095	13.4	4.5	1	23	616	638	616	638	0.97
10	12	0.0062	0.44	11.3	4.4	2	21	645	664	644	667	0.94
11	12	2.2	1.5e+02	3.3	1.5	1	19	674	692	674	693	0.88
12	12	0.043	3	8.6	2.4	3	19	706	722	705	727	0.94

Sequence Information

Coding Sequence: ATGGAGGAAGAGATCTATATTGCTGAATCAGACAGGATCTATCCAGTGCTTCTCATCCCTAAGAAATGCACTTCCTTTGAAACTAACCACGACGCTACAGACAACTTGTTAATTGTCGTCAATATTACTTCTCCTGATACTGAAGGCAACGAAACCTGTATTTATTCTGGTTTttgtaatgttaaatttatagataGTTACGATGTTAACATAAGTGATATAGATATAAACGGACAGACTGATTCAAATGAAAATCCTATCCCTATTATAGTTAATGATGCAAATCAGTCATATGCACCGTATACTCAGTCGCAGGTGTGGATAGATCCAGCAAGAAGTCCGTATGTATATAACAGCCATGACGCTGTGGGATCTCAGGAACATTATTCGGTATATCAACAATCTCACTCAAGCCGTATTACTGTGGAACAGCATAACActtatataacacaaaatgtttataattacaaGGAATCAATACAATATTCACCTGTGGAAGAATTTGAACATAAAAAGTTTAGGAAAATACCAAATAATGATAGCAGTCAAGTAATAGatacaaatttatatgaaaacgaTGAATTTGAGTGTGGCGTTTTCTTGACTCAGCTGCCGGAGGAAATTATGCAAGAGAATGAGAATAGGGCTAGAGAGGAGTTAAAGCACATCGATTTGCAAAGTGAGAACGACGCGTTGAAACAGCTTATGTCGTCGGATATTCAATCCTTGTCGAAACAACAAAAGACAATTCTATATTCGGGCCACGACTCCCACTACGGGCAGACTATACAGAAGATAAGGGTGAACGATCCGTCCTTGGAATGTGTAGAAAACGGGGTTGAAAATGAAGTCGTTGTAGaaaccAATTCAACAAACCAGAAAAAGTATCAATGTGAGAAATGCAAACAACTATTCGATCAAATAACCACGTTTAAACAACACATGGTGGGGAGCCACAAGAGCAAAATATCAACAATAGAAAACGACTCTATACgcgatataaaatttatatgtagcgATTGCGGTAAAGTATTGAAGAGTAAGAAAAAATTCGAGGTCCACCGCCTCGGGCACGGGGACCCTGACCTAGAGTGTAATAAGTGCCACAAAGTATTCGCTTCCAAGTTCACGCTGAGGAACCATCAGAAGATACACCAGAGAAAGCATCAGTGTTCGTACTGTAGCAAGTCGTTTTATCACGTGAGAGATTTGAGGAATCATGTTGAAAAAAtccattttgttttcatttgtgAGATGTGTGATTTTAGTGCGTCTAAATATTCTGAATTGAAAGCTCACAAGTTTACTCATAAGGAGGAGGATGAATTGAAGCAAACAGgtGAAGATAGTTTTACACTACCATTAGATGATAATATAGTAAGTAGCAGTAGTACGCTAATGCCGTCTTCTTCCGAGGACTTCATAATAAGATCTGATGAAGACCAGTCGAAGTTGGACGAGATTGAAAGAGCTGACTCGGTAATAGCCAAAGTTATGGCTAACGAAATATTCATGTTGCATTCGAGAAAGGCGTTGAAACACAAGAGATATAAAAAGaCTTGCGACGTTTGCCTGAAGTCTTTCGATCGTGTTGGTGATTTGAAAAGACATTTGATAGAGCATGTCGTGAGGAGTACTCTTGCTAAGACACCGGTCAATAAAAATGGCACCCTCACTATACAATGCGAgGTATGTCAATCCGAAACGTTCTCAAAAGTTGACAAATACAAGGCCCATTTACGCGAACACGCCAAACTTACCTTATATAAATGCACATTTTGCGATAAATCCTTCAGCGACTCGAGCAATTTctctaaacataaaaaaatccacGGCACCACCTTCTTCCAGTGTGATCTATGCCAAAGAAAGTTCAATTCGAAAAAAATGATAACACATCATATGGAATATCACAATAATAATTCACCCATATCCTGTTTCTACTGCGATAAAGAATTCCATTTCCGGTCAATGCTAAACAAACACATAAAATGTGCTCACACTCGAGAAATAGTGAAGTTTCGTTGTAGATTTTGTCaagaatatttcaaaactttaaAAGATAAATGGGATCACGAATGGCGGGTGCACAACGTTAGAAAAATGATTGTTGACTGTTTGATTTGTGGATCTAAATTTAGGAAATATTCGGAATTAAAAAAACACTGCACTCTCGCTCATGATATGGAAATACCACCAGCTAAGAAGTTATTAAGGAAGAGAAAATCGCTTTAG
Protein Sequence: MEEEIYIAESDRIYPVLLIPKKCTSFETNHDATDNLLIVVNITSPDTEGNETCIYSGFCNVKFIDSYDVNISDIDINGQTDSNENPIPIIVNDANQSYAPYTQSQVWIDPARSPYVYNSHDAVGSQEHYSVYQQSHSSRITVEQHNTYITQNVYNYKESIQYSPVEEFEHKKFRKIPNNDSSQVIDTNLYENDEFECGVFLTQLPEEIMQENENRAREELKHIDLQSENDALKQLMSSDIQSLSKQQKTILYSGHDSHYGQTIQKIRVNDPSLECVENGVENEVVVETNSTNQKKYQCEKCKQLFDQITTFKQHMVGSHKSKISTIENDSIRDIKFICSDCGKVLKSKKKFEVHRLGHGDPDLECNKCHKVFASKFTLRNHQKIHQRKHQCSYCSKSFYHVRDLRNHVEKIHFVFICEMCDFSASKYSELKAHKFTHKEEDELKQTGEDSFTLPLDDNIVSSSSTLMPSSSEDFIIRSDEDQSKLDEIERADSVIAKVMANEIFMLHSRKALKHKRYKKTCDVCLKSFDRVGDLKRHLIEHVVRSTLAKTPVNKNGTLTIQCEVCQSETFSKVDKYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGTTFFQCDLCQRKFNSKKMITHHMEYHNNNSPISCFYCDKEFHFRSMLNKHIKCAHTREIVKFRCRFCQEYFKTLKDKWDHEWRVHNVRKMIVDCLICGSKFRKYSELKKHCTLAHDMEIPPAKKLLRKRKSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00457520;
90% Identity: iTF_00777533;
80% Identity: -