Basic Information

Insect: Heliconius hermathena
Gene Symbol: -
Assembly: GCA_013403705.1
Location: JAAIXJ010000229.1:301601-311815[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0004 0.028 15.0 1.4 1 23 226 248 226 248 0.98

2 10 0.24 17 6.3 0.1 3 23 273 294 271 294 0.94

3 10 6.9e-05 0.0049 17.4 0.2 2 23 316 337 315 337 0.95

4 10 0.0001 0.0072 16.9 1.5 1 23 341 363 341 363 0.98

5 10 0.00027 0.019 15.6 0.2 1 23 370 393 370 393 0.97

6 10 5.7 4e+02 2.0 0.1 3 23 401 422 399 422 0.82

7 10 5.1e-05 0.0036 17.9 1.7 1 23 428 451 428 451 0.97

8 10 0.00011 0.0075 16.8 1.3 1 23 457 479 457 479 0.98

9 10 4.9e-06 0.00035 21.0 0.9 1 23 485 507 485 507 0.99

10 10 1.5e-06 0.0001 22.7 3.3 1 23 513 535 513 536 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0004	0.028	15.0	1.4	1	23	226	248	226	248	0.98
2	10	0.24	17	6.3	0.1	3	23	273	294	271	294	0.94
3	10	6.9e-05	0.0049	17.4	0.2	2	23	316	337	315	337	0.95
4	10	0.0001	0.0072	16.9	1.5	1	23	341	363	341	363	0.98
5	10	0.00027	0.019	15.6	0.2	1	23	370	393	370	393	0.97
6	10	5.7	4e+02	2.0	0.1	3	23	401	422	399	422	0.82
7	10	5.1e-05	0.0036	17.9	1.7	1	23	428	451	428	451	0.97
8	10	0.00011	0.0075	16.8	1.3	1	23	457	479	457	479	0.98
9	10	4.9e-06	0.00035	21.0	0.9	1	23	485	507	485	507	0.99
10	10	1.5e-06	0.0001	22.7	3.3	1	23	513	535	513	536	0.96

Sequence Information

Coding Sequence: atggcggaaactaatataaaaaaaaatcaagggcCTCTAATAAATCCTGCGCTGTGTCGCTGTTGCCGCTCAATAAAGAAATGTCGACTGTTAACTAATGAATACGAGTTTATGGATACGAAAGAAGTTTATTCTGATATGTTGATGGATGTTTTTGGTCTTCTTTTATCACATTTAGATGGTGATAGTAAAGACTGCTGTATATGTGCAACATGTGTGTCCCGCCTTCGTGAAGCAAGTGCGTTTAGACAACAAGTGCTACAATCTGAGCAAATGTTTTTGGAAGCAAGATTGCAGAATAAGGAAgATATTGATGAAATAATCAAGACTGAAATAAAAACGGAGCCTGTATATGATTCTGACACACCTGACATGCCAGATGAAACACCAGAAGAAAATGaagaAAATAACACAAGATTGCCTACAAAAAAGATTACAGATAATAAGCcaaaacaacttaaaaaaactaGAAATGGACATAAAAGTAAAGCTAGCAAAGAACTCAGGAATAGTAAGAGATTGAGAGTGAAATTGGATAAATTGTTGATAACaaATAATCTTCCCAAGAAAATGGCGTCAAAAGACATTATAGACCACAACCAAATGGCCTACTCCAATACAGTGGCCATAGTACAAAATTCGTTTGTCTGTCCGTTCCACAATAGGGTTAGTATTTACTATTGCTACTATTGCAAAGATCAATTCACCAATCCCAGTGAACTGAGAGACCACACTTTGATGCACGACCCGAAAGAACTATTTGAAGACACAacagaaaataagaaaatacccAAAATTGACATTACAAGAATCGATTGTCGACTTTGTCCAGAAAAAATTGATGATTTGGAAACTTTTAAGAAACACATCACTAGTGTTCATGAAAAGTCAATTTATCCCATCATAAACGAGTTCCTTAAGTTtcgtttaacattaaataatttgagTTGTACCGAATGTGGGAATGTTTTTCCTTATTTTGATTCGTTGAAGAAACACATGATCGACCATTTTGGTACGTTCACCTGCGATATATGTGGGACTTGCTTTCTAGAACAGGCTTCTCTACGTACTCATATAAAATCTCATacaaaaatcgatttaaatttcCCTTGTGAAATATGCGGAAAGAATTTGAAATCTAAATACAGCAGGACTTTACACATTGCAACAGTGCatgaaaaaaaaccttttgtcAACTGCTACAAGTGTGACGCTGCCTTTCTCTCATACGCTTTAAGAAATAGACATTTGATTGAAGTTCATGGTGATAAAAGAACATTTCCTTGCAAATTATGCGATAAGGTGTACAACAGGAGGAAAACTCTTATGGAACATAATCGAAGGAATCATCTAAAAGTGTATAGACATCAGTGTGAACTGTGCgatcaaagattttatttgcCGTCCCGTTTGAAGGAACATATGGCGACCCACACCGGTGAAAGGAACTATAGATGTGAATTTTGTGATAAAAGTTATCCTCGACTCCAGTCGTTGCAAGAACATGTGCGGAGTCATAATAGTGAAAGAAGGTTCAAATGTGATATATGCAATTCAAGCTTTACACAAAGTGGTAGTTTAAAAAGTCATATGAAAAGTCATCATCAGGTGTTTGATATGGATGGCAGTTTTAAATTgtag
Protein Sequence: MAETNIKKNQGPLINPALCRCCRSIKKCRLLTNEYEFMDTKEVYSDMLMDVFGLLLSHLDGDSKDCCICATCVSRLREASAFRQQVLQSEQMFLEARLQNKEDIDEIIKTEIKTEPVYDSDTPDMPDETPEENEENNTRLPTKKITDNKPKQLKKTRNGHKSKASKELRNSKRLRVKLDKLLITNNLPKKMASKDIIDHNQMAYSNTVAIVQNSFVCPFHNRVSIYYCYYCKDQFTNPSELRDHTLMHDPKELFEDTTENKKIPKIDITRIDCRLCPEKIDDLETFKKHITSVHEKSIYPIINEFLKFRLTLNNLSCTECGNVFPYFDSLKKHMIDHFGTFTCDICGTCFLEQASLRTHIKSHTKIDLNFPCEICGKNLKSKYSRTLHIATVHEKKPFVNCYKCDAAFLSYALRNRHLIEVHGDKRTFPCKLCDKVYNRRKTLMEHNRRNHLKVYRHQCELCDQRFYLPSRLKEHMATHTGERNYRCEFCDKSYPRLQSLQEHVRSHNSERRFKCDICNSSFTQSGSLKSHMKSHHQVFDMDGSFKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00780468;
90% Identity: iTF_00780468;
80% Identity: -