Hher014895.1
Basic Information
- Insect
- Heliconius hermathena
- Gene Symbol
- znf423
- Assembly
- GCA_013403705.1
- Location
- JAAIXJ010000229.1:247378-250294[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 3.1 2.2e+02 2.8 0.1 2 23 30 52 29 52 0.91 2 22 0.0023 0.16 12.7 0.4 3 23 77 97 75 97 0.96 3 22 0.00051 0.036 14.7 0.7 1 21 101 121 101 122 0.96 4 22 1.3 91 4.0 0.4 1 23 163 186 163 186 0.95 5 22 5.2 3.7e+02 2.1 1.0 2 23 212 234 211 234 0.92 6 22 0.0034 0.24 12.1 0.8 2 23 258 279 257 279 0.95 7 22 0.00023 0.016 15.8 0.0 1 23 283 306 283 306 0.97 8 22 0.031 2.2 9.1 0.5 1 23 310 333 310 333 0.97 9 22 3.1 2.2e+02 2.8 0.3 1 23 338 363 338 363 0.89 10 22 0.00043 0.03 14.9 1.8 1 23 372 395 372 395 0.97 11 22 0.39 27 5.6 0.6 3 23 464 485 463 485 0.97 12 22 1.8 1.3e+02 3.5 0.2 1 23 508 531 508 531 0.91 13 22 0.00053 0.037 14.6 0.8 2 23 555 576 554 576 0.96 14 22 0.023 1.6 9.5 0.5 1 21 580 600 580 601 0.94 15 22 0.24 17 6.3 0.1 1 23 642 665 642 665 0.95 16 22 0.42 30 5.5 1.0 2 23 691 713 690 713 0.95 17 22 0.0043 0.3 11.8 0.3 2 23 737 758 736 758 0.94 18 22 9.9e-05 0.007 16.9 0.0 1 23 762 785 762 785 0.97 19 22 0.53 38 5.2 0.9 1 23 789 812 789 812 0.97 20 22 2.2 1.6e+02 3.2 0.3 1 23 817 842 817 842 0.90 21 22 0.12 8.7 7.2 5.4 1 22 851 872 851 874 0.88 22 22 0.00047 0.033 14.8 2.2 1 23 884 907 884 907 0.96
Sequence Information
- Coding Sequence
- ATGAAAGTGGAACATGTCAATactgattttaaaaatgttttttatagaactaaagataatttagttaaaattgatataactaaTCTTAAATGTAACATTTGTAGTCAGGATATACAAGATATAGATACTTTAATGGGCCATCTATCAAGAGAGCACAACAAATCAGTGAAATTTAACGCGCGTTTTGGTGTATTACCATACAAACAAAATGCAAACGATCAATGGATATGCGtgtattgtaaaaaaacttatgtagaatttattcaatttaaacgtCATATAGCGACACATTTTATGAACTTTAGCTGTGACAAGTGTGGTACAACTTTCATATCTGATCACGCCTTGCGAGATCATCGTCGTCAGGTTAAATGTTTTAGGACTGCTTACAAGCCTCGAAATGGCAGAGTCATGAAACCTCGTACAAACGCAGAAATTATTCTTCAATGTTCAACTGCCTGTCCATTTAGGACATGGAAAAGCAATTTTAATTGTGTGTTCTGTAGAGTACAATCAAGCGATCCAAGTATACTTCGAACTCATATGGTGACTCGCCACGAAAATTATGATGTACAAGcagctttttataaaaaattaggtAAAGAATTTCTTAAGATTGACATAACTGACCTTCATTGTAAACTATGTTTTATTCCTATTGAAAATTTCGAAACTTTAACATATCACTTAAAGAATGATCATCAACAACCAATAAATTCAGATGCCCAAGTGGGTGTTTTGCCTTTTCGGTTAAACGATGGCTCGATTTGGAAATGTACAATGTGCCCTAATGagtttaaagattttgtatcattaaaaaaacacacatccGAACACTTTCAGAATTACGTATGTGATACTTGTGGCGAAGGTTTCATTACTGAATCGGCCATGATAGCACATACTAAAATACctcatgaaaataaatataattgtagtcGGTGTGTGGCTACTTTTTCCAATTTGGAGGAGCGAAATGTTCATGTTAAAACACAACATACCTCGACCCCGTATATGTGTGTTTACTGTAAAGATAAGCCTCGTTTTGCTAATTGGGAACTTCGGAAGAAACATTTAATGGAAGTCCATAATTATAAAACTGGTGCTGATAAATATGAATGTGCTACTTGTCAGAAATCTTTTAAAACTCGATCAGGAAAATACAATCATATGGCAAGAACTCATAGAGTAAAAAAAGATACTGAATTAAACTACCCTTGCCATAGCTggaCCACAAGGGATATTGACGGgcacaaagaaaaagaaagtaaagctaaaaaaggttTATTTGAACGGTCCGTTAAGCAGAATCCCCAACGGCGAAATGCTGTGCTAATACTTAAACACTCATCTGCTATTCCATTTAAAACTAGATTTAATAGAATACTTTGCTCTTACTGCCACGATGAATTCGAACCAATGGACGCTTTAAGAGATCACGTCAAGACAAAACATGTTAACGCTGATTACAATAGCGCCTTTTATAAAGTTGTGGATGATTTAAAAGTAGATATTagtcattttaaatgtaacatatgtttagaaaatattcaaaGTGTTGAAATGTTTATGGCACACTTGTCTCGCGACCATGGCAAAATTGTTAATTTCGATGTGCCCTTTGGCGTTTTACCATACAAGCAAAATGAGACTGGCGTATGGATGTGTCTAGATTGTGACAAAGTATTTTCTGAATTTTCACATATTAATGGACATTTACGTAGTCATGCGAAAATTTTCACCTGCGATAAGTGTGGAGCGACATTTTTATCTGAACACGGGCTTAAGCAACACGAACGTAACTTTAAATGTTACAAGGCAACATATAAACCACGTTTTGGAAAGGCCCTAAAACATCGTTTTAACactgaaataattttacaatgctCAACTGCATGCCCTTTTCGTACTTGGggacaaaattttaattgtgttttCTGTCGTGTTCAGTCCAATGATCCAAACGGTTTGCGTGCTCATATGGCGTCACGACACGCAAATTTTGATGTTCAACTGGTGTTTAGTAGGAAATTACGTAAAGAGTTTCTTAAAGTAGACATAACCGATTTACAGTGTAAACTTTGTTTTATGCATATAGACACTCTTGACGAACTTTTGACTCATTTAAAGAACGATCACAAACAACCTGTCAATGTGGACGTTCAACCAGGAGTACTCCCTTTTAAGCTCAATGACGGTTCCAGTTGGAAATGTGCGATATGCAAAATacaattttcagattttatatCTTTGAAAAAGCATACAGCGgaacattttcaaaattatgtCTGTGACACTTGTGGTGAGGGTTTTATAACAGAAGTTGCTCTTAGAGCACATACGAAAATTCCACATGACAACAAATATAATTGCAGTAGGTGTATAGCAACGTTTTCTACCTTAGAAGAGAAAAACACCCATGTTAAAACACAGCACACTACCCTTCCGTATATGTGTGTTTATTGCAAAGACAAACCAAGATTTGCCACTTGGGAGCTAAGAAAACGGCACTTAATGGAAATTCATAATTACAAGCCAGGTGCTGAAATGTATGAGTGTACAACATGTCACATGATGTTCAAGACTAGGTCTCAAAAATATCACCATAACGTGAAAGTACATCGCGCAAAAAAAGAAATGGATTTCGGTTTTTCTTGCGGTCACTGTTCCAGAAGTTTTGCTACAAAACTATCTTTGGATAAGCATATAGCTAAAAAGCATTTTCACGTTTGA
- Protein Sequence
- MKVEHVNTDFKNVFYRTKDNLVKIDITNLKCNICSQDIQDIDTLMGHLSREHNKSVKFNARFGVLPYKQNANDQWICVYCKKTYVEFIQFKRHIATHFMNFSCDKCGTTFISDHALRDHRRQVKCFRTAYKPRNGRVMKPRTNAEIILQCSTACPFRTWKSNFNCVFCRVQSSDPSILRTHMVTRHENYDVQAAFYKKLGKEFLKIDITDLHCKLCFIPIENFETLTYHLKNDHQQPINSDAQVGVLPFRLNDGSIWKCTMCPNEFKDFVSLKKHTSEHFQNYVCDTCGEGFITESAMIAHTKIPHENKYNCSRCVATFSNLEERNVHVKTQHTSTPYMCVYCKDKPRFANWELRKKHLMEVHNYKTGADKYECATCQKSFKTRSGKYNHMARTHRVKKDTELNYPCHSWTTRDIDGHKEKESKAKKGLFERSVKQNPQRRNAVLILKHSSAIPFKTRFNRILCSYCHDEFEPMDALRDHVKTKHVNADYNSAFYKVVDDLKVDISHFKCNICLENIQSVEMFMAHLSRDHGKIVNFDVPFGVLPYKQNETGVWMCLDCDKVFSEFSHINGHLRSHAKIFTCDKCGATFLSEHGLKQHERNFKCYKATYKPRFGKALKHRFNTEIILQCSTACPFRTWGQNFNCVFCRVQSNDPNGLRAHMASRHANFDVQLVFSRKLRKEFLKVDITDLQCKLCFMHIDTLDELLTHLKNDHKQPVNVDVQPGVLPFKLNDGSSWKCAICKIQFSDFISLKKHTAEHFQNYVCDTCGEGFITEVALRAHTKIPHDNKYNCSRCIATFSTLEEKNTHVKTQHTTLPYMCVYCKDKPRFATWELRKRHLMEIHNYKPGAEMYECTTCHMMFKTRSQKYHHNVKVHRAKKEMDFGFSCGHCSRSFATKLSLDKHIAKKHFHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00028037;
- 90% Identity
- iTF_00213834;
- 80% Identity
- -