Hher009344.1
Basic Information
- Insect
- Heliconius hermathena
- Gene Symbol
- -
- Assembly
- GCA_013403705.1
- Location
- JAAIXJ010000607.1:72925-75345[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-06 0.0011 18.8 0.0 14 44 32 62 19 63 0.84 2 2 1.1 7.9e+02 0.1 0.0 8 27 418 436 416 437 0.77
Sequence Information
- Coding Sequence
- ATGCCgcgaaaatataaaagaaaggaAGGAGTGCGAGCTCGAGTATGTTCTTGGACTGCAGAGAACCTACAGTCAGCTTTTGATGAAATGGATAAAAAAACCATGGGGATAAACGAAATATCCCGACAATTTGGAATTCCATCGAGGACATTGCGAAGACGATATGCTGTTAAAAATTCAGCAAAGTTGACACTAGgaaaacaTCCTATTTTGGATTTTGACAACGAGAAAAGGCTAGTCAAGCACATTCTCAAACTTGGTGATGCTGGATTTCCCCCAAATAGACAAGCCATACGCATGTTGGCTTATCAATTTGCTGAAAAGCTAGAgctaaaacataattttgacCACGAAAACGAAATGGCTGGAGGTGCGTGGTTCAAAAGTTTTATTGAACGGAATCCGGAACTATCTATCAGACAAGCTGAAGGCTTATCCGTGGCTAGAGCTAAAGGTCTTAGTAGAGAAGAAGTAAAAAACTTTTATGATCTTTTGATCAAAGTTCTGACCGAAAATGATCTGTTGGACAAACCAGAAAGGATCTACAATATGGATGAATCCGGTatccaattaaataataaacccGGAAAAGTTATAGCAAAAAAAGGTGCAAAAGTTGTCAATTCAGTCACTTCTGCCGAGAAAGGTGAAACCATTACGATCGTTGGCTGTTGCAATGCAATTGGTAATTTCCTTCCACCAGCTCTAATAATAAAAGGTGTTAATAAAAAACCTGAATTTGAGGATGGACTTCCAATGGGCTCAAAAGTCTTCATGAACAAAAAGTCAGCTTATATCAACGCTGAGCTTTTCTATAAATGGTTAACAGAACATTTTATACCTCTGAAGCCCCATGGTAAGATTCTGCTGATTTTAGATGGTCACTCGTCACACTCAACTGCACCAGATATGCTGCAAGCTGCtactgataataatataattttactgtgTTTACCTAGTCACACAACTTCAGCCTTACAGCCTTTAGACAGAGCAGTATTTGGGCCCTTTAAAACCTATTTCAACCATGAAACCAATCAATTTATGCGCTTGAATCCAAATAAAAAGATCAGCCGTTACAATGCTGGAAGGCTTATACATAATGCTTGGATTCGCGCTGCAACCCCTGCAAATGCTCTTGGTGGCTTTAGAGGTAGTGGTATTTACCCAGTTGACCCGAATGCTTTGCCAGATACTACATTTCTGATATCAGATATGGCACTGGGTAGTGAAAATCCTGACACTTCTCGTGCGCTTGATCAAGTTGTGGGACAAACGTCAACAACCCAGCTTCAGACATCTTATTCGTTAGATTCCCATCCACGGCTCGCCAATGTCtcagaaaataaagaatttcgTGCGCCTATTGCGGTTAAACAAGGAAAGGAACAATCTCTGTCTCAGATTTCTGATTCTACACTTTGTCAACTAGAGTTGAACAATCGGAGAGAAAATATATCAGAACacgaacaaaataaaacacCGCCAAATCCAATACGTACTCTAATTGACAGAGAATCTCCTAGTCTCTTGCTTGATTCTGAAATTTTAGAGGATATTAGTCTTGTTGACATTGGTGATTCTACAATTACAGAGATTTTAGGGAATTATATAGAACTAGAAACACCTTCAAAAATTCTGATAGACGCCTCACCTATTCCAAAAATTCCTTTGACTATGGCTAAGAGAGTGAAACAATCGGCAGACATTTTGAattctaaagaaaatataagacaCAAGAAGGATATGGCtgagagaaaagaaaaacaattcaaaACTAAGTTAGACAAGAAAAAGAAGACTGAAACTACCAAAAAActtaagaaaactaaaaaaagaaccaCCAGTACAGACaccaaaactataaaaataaaacaaaatgaaacaaattcTTCCAGCGAAAATGACGATGACAATCTAGCTGACTcgtgtaataaagaaaataataattatttaaacatataccaAAACCGAACTTCACTAAAAAGACAAACTATTTACAGTTCAAGCAGTGAAGATGAAAATAATctatctaattataaaattaaaggaaaaaaaactaaaggtttgcctgtaaaaaaaactaaaagagaTAGACAGGATAACGTCAAAGATACAAATAAAGATAACTGCATTGAATGTtttgaaaactataaaaatacgaAGTCGCAATCCGACTGGATTCAATGTGTAATGTGTCAGAACTGGCTACATGAAACCTGTACACTTTTCAGAAATTATTGCGCAAGAtgtggaaaaataaaaacccaGTCTggctatatttcaattaaattggaataa
- Protein Sequence
- MPRKYKRKEGVRARVCSWTAENLQSAFDEMDKKTMGINEISRQFGIPSRTLRRRYAVKNSAKLTLGKHPILDFDNEKRLVKHILKLGDAGFPPNRQAIRMLAYQFAEKLELKHNFDHENEMAGGAWFKSFIERNPELSIRQAEGLSVARAKGLSREEVKNFYDLLIKVLTENDLLDKPERIYNMDESGIQLNNKPGKVIAKKGAKVVNSVTSAEKGETITIVGCCNAIGNFLPPALIIKGVNKKPEFEDGLPMGSKVFMNKKSAYINAELFYKWLTEHFIPLKPHGKILLILDGHSSHSTAPDMLQAATDNNIILLCLPSHTTSALQPLDRAVFGPFKTYFNHETNQFMRLNPNKKISRYNAGRLIHNAWIRAATPANALGGFRGSGIYPVDPNALPDTTFLISDMALGSENPDTSRALDQVVGQTSTTQLQTSYSLDSHPRLANVSENKEFRAPIAVKQGKEQSLSQISDSTLCQLELNNRRENISEHEQNKTPPNPIRTLIDRESPSLLLDSEILEDISLVDIGDSTITEILGNYIELETPSKILIDASPIPKIPLTMAKRVKQSADILNSKENIRHKKDMAERKEKQFKTKLDKKKKTETTKKLKKTKKRTTSTDTKTIKIKQNETNSSSENDDDNLADSCNKENNNYLNIYQNRTSLKRQTIYSSSSEDENNLSNYKIKGKKTKGLPVKKTKRDRQDNVKDTNKDNCIECFENYKNTKSQSDWIQCVMCQNWLHETCTLFRNYCARCGKIKTQSGYISIKLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -