Hher005359.1
Basic Information
- Insect
- Heliconius hermathena
- Gene Symbol
- -
- Assembly
- GCA_013403705.1
- Location
- JAAIXJ010000974.1:808-6684[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.8e-10 5.5e-07 29.4 0.0 1 37 118 154 118 159 0.90 2 2 4.1 2.9e+03 -1.7 0.1 30 42 476 488 476 491 0.80
Sequence Information
- Coding Sequence
- atggaaataaattctaatattgaatatatagaaAGATGTAAATGTTGCCTGGAAATAGTGGGTTTGAAAAATATGTGGTCTGCTTACAATAGAGGCGATGAAACCGAGATATATGGACAAATGCTTAATAACTGTTATGTTCTTGACTGGGAGCACCCGTCAAAGGATGATTACTCTGAGCATATATGTGAGGTGTGTATATCAAGGTTGCGTAATGCTGTTAGTTTCAAAAAAGAGATTTTACTCTCGCAGCAGTTGTTGAAGGAACAGTTAAGAtatgaaattaaaatggaaacaaaaaacaaaccgaTCAATGAAGAATTACTACTaaacaaaagaattaaaaaatatacagatgaTGACTTACAGAAATGCGTTGAagctgttttaaataaaactttatcacAAAACAAAGCatccatattgtataatataccaAGAAAGGCTATTAGTATGGCTGTTTCTAAAACGCAACGTTTAGACGAAacgacaaaacaaaaaaagaaacgaaaaaatCCAGATCTACAAAAGTGTCAAGAGAACTtggatagtataataaaatatacaaatgcaACTCCTTTCAAAGGATTTCTAAGAATTGGATATTCCTGTCATTTCTGTAAGGAAGAGTATGAAAGGCCAAGTGATTTAAAATctcatacattaaaaaaacacttaaccGAAAATGTAATGCAAGTGACAGTGTTGGCAGACACTAACGTCAAATTAGACATAACTGGACTAAAGTGTAAATTTTGTGATGAGAACATTGATAAACTCGAAAGTGTTTTGTTACACTTGAGCGAAGTGCATAATGAAAGAATACATACTAAAACAGCTAATTATTTAATACCATTTAAGTTTGATAGTGAAGTGTTAAAGTGTGTTGTGTGTTCTGACGAATTTCAGAGTTTCAAACTTTTAAAtgatcatataaatttaaatcattatacAAACTATGCATGTTCAAAATGTGGTCGTGGCTTCATAAATAAGCGGTCCCTAATAACACACAGTTACAGACACGAAACAGGCATATTTTCCTGTCAATATTGCCCAAAAGTGTTTTCTAATCGCGTCCGTAAAATAGCCCACGAGCGTTCAGTCCACTTGTTTAATAGTAAACGCCATAAATGCGGATACTGTGGTGAAAGATTTACAGACGTTGTCAAGAAAAAAGATCACGAAGTGAAGATACACAATGCGCCAAAACCGATCTACACTTGCCAAGCATgtaacaaaacatataaaagtcAAAGGTCGCTTAGAACGCATATACGAGGGTTTCATTTGCTGCTGCGGCCGTATAAGTGTGCACAGTGTGAATTTAGtgcttttaaaaacattgaacTAAAAATGCATATGGTTAAACACACTGGTTCAAAAAATTTTTGTTGTGTTGTGTGTTCCAAATCATATGGAAGAAAATCGACACTTCGTGAGCATATGCGTATACATGTGAACGATAAACGGTTTAAATGTGAACACTGTATGCACGCGTTTGTACAGAAATGTAGTTGGAAGACGCATATGCGGACGAAGCATGGTAAAAGTCTTTAG
- Protein Sequence
- MEINSNIEYIERCKCCLEIVGLKNMWSAYNRGDETEIYGQMLNNCYVLDWEHPSKDDYSEHICEVCISRLRNAVSFKKEILLSQQLLKEQLRYEIKMETKNKPINEELLLNKRIKKYTDDDLQKCVEAVLNKTLSQNKASILYNIPRKAISMAVSKTQRLDETTKQKKKRKNPDLQKCQENLDSIIKYTNATPFKGFLRIGYSCHFCKEEYERPSDLKSHTLKKHLTENVMQVTVLADTNVKLDITGLKCKFCDENIDKLESVLLHLSEVHNERIHTKTANYLIPFKFDSEVLKCVVCSDEFQSFKLLNDHINLNHYTNYACSKCGRGFINKRSLITHSYRHETGIFSCQYCPKVFSNRVRKIAHERSVHLFNSKRHKCGYCGERFTDVVKKKDHEVKIHNAPKPIYTCQACNKTYKSQRSLRTHIRGFHLLLRPYKCAQCEFSAFKNIELKMHMVKHTGSKNFCCVVCSKSYGRKSTLREHMRIHVNDKRFKCEHCMHAFVQKCSWKTHMRTKHGKSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00778306;
- 90% Identity
- iTF_00778306;
- 80% Identity
- iTF_00778306;