Hher012011.1
Basic Information
- Insect
- Heliconius hermathena
- Gene Symbol
- -
- Assembly
- GCA_013403705.1
- Location
- JAAIXJ010000114.1:348646-349218[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-12 1.5e-09 37.5 0.0 2 37 12 46 11 52 0.91
Sequence Information
- Coding Sequence
- ATGTCTCTTTCGAGGCCCATATTACAATACCCTGAAGACAAACTAACTCAAGCTTTAGAGGCTATCAGAAATGGCATGCCAATTAGAGAAGCTAGTAGAAACTTTGGGGTTCCTCGAGGCACAATTCAAGATAGACTTCACCTCCGAGTTCCTGAAGGTCTTAGAAAAATGGGTCCTGACTCCATCCTCAACAAACTAGAAGAAACGGAAATTGCAATTTGGCTGAAAGACATTGCAACTTGTGGTTTCGGGAAGAAACctgacaatttatttaatactgtcCAAGACATGATGATTGAAGACGGCAGGCCCAATCCCTTTGTAAATGGAAGACCAGGCAAAAAGTGGATGAATTCGTTTTTCAAACGTAACAATATGTTTTCCATGAGAACACCTGAAGCTATTTCAAAGGGAAGAGCAGTAATTACTGAAGAGAGTGTTAGAAAGTGGTTTGTGAAACTCACAGATTACCTAACTAAAAATCAAGCACTCGAAGTGTTAGAAGACCCTAAAAGAATACTAAACGGTGACGAAACAAGCTTCATGGTTTGCCAAAAACCGGGAAAGTCATAG
- Protein Sequence
- MSLSRPILQYPEDKLTQALEAIRNGMPIREASRNFGVPRGTIQDRLHLRVPEGLRKMGPDSILNKLEETEIAIWLKDIATCGFGKKPDNLFNTVQDMMIEDGRPNPFVNGRPGKKWMNSFFKRNNMFSMRTPEAISKGRAVITEESVRKWFVKLTDYLTKNQALEVLEDPKRILNGDETSFMVCQKPGKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00908744; iTF_00842582; iTF_00677475; iTF_00677479; iTF_00677480; iTF_00775960;
- 90% Identity
- iTF_00842582;
- 80% Identity
- -