Hher012277.1
Basic Information
- Insect
- Heliconius hermathena
- Gene Symbol
- -
- Assembly
- GCA_013403705.1
- Location
- JAAIXJ010000380.1:5480-13165[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.5e-11 3.8e-08 33.1 0.0 4 39 236 272 235 276 0.90 2 4 3.1e-11 2.1e-08 33.9 0.2 2 39 288 325 287 328 0.92 3 4 3.1e-15 2.2e-12 46.7 0.1 2 45 343 387 342 387 0.96 4 4 1.8e-17 1.2e-14 53.8 0.0 1 38 394 432 394 436 0.94
Sequence Information
- Coding Sequence
- ATGACTGGGACGGAAACATTCCGAGTGAAATGCGAGCCACTATCCGATGAAGAAGAGATAAGTTCACAGTTcaccaaaagttattttaataagATGAGTCCAGATTCTGTCTTAAGCCAGATGATAGTAGGACCAAAATATGGAGACGACTCGGAGAAAGATACGATCACTGTAACATTGTTGGAAGAGATCCTTTTGGTGGAGTGTGACTTATGGTATGGGGCGGTTGTAATGCATTTTGCCTCATTCATGGGGAATCATATTCTTTTGATGCATGATAATGCTCTACCTCACACTGCGGCGATAGTTTCAGAGTATCTTTCTGAGGTTGGAATTCAGGTTTTGGGGTGGCCAACGCACTCGCCAGATCTTAATTCCATAGAGCATGTGATAAAGTGgCACGGGCTGGAGGAGCtggcgcccgcgcccgccggcCCCGCCGCCACGCCCGTGCGCGACCAGCTGTGCGCGCCGCGCCACGCCGCGCTCGCCACGCTCGAGCCCGCGGCGGACCGCCACGCGGGGACTTCCCTCATTAGTAGACATATGGAAACGATGAATGAAGTGGCGGACTCGTCGGAGTTCGTACCGCTGATGATTAAAGATgagccgaAACAACCACATCTAAGTAGTGATGACACGGACTCAAACGGACCAACACAAGAAACGTTCAGCCGATCGAGCCCTAAAAGCTGGACTCAACTAGACATGGAGAAAGCTCTGGAAGCTTTGAGAAAACATCACATGAGTTTGACTAAGGCATCAGCAACCTACGGTATCCCATCAACTACCCTGTGGCAAAGGGCACACAGGCTCGGTATAGATACTCCCAAAAAGGAAGGGGCTTCGAAGTCGTGGAGCGAAGCGGACTTAAAAGGAGCTTTACACGCTTTACGAGCCGGTGCCATATCTGCTAATAAAGCAAGCAAGGCTTATgGCATCCCGTCCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGCCTGGCCGCGCCCTTCAACGCCGCGCCCACCGCCTGGCGCCGCGCCGACCTCGAGCGCGCGCTGCTCGCCATCCGCGCCGGCCACGCGTCCGTGCAGCGCGCCGCGCGCCTCTACGGCATCCCCACCGGTACTCTATACGGAAGGTGTAAGCGGGAAGGTATAGAGCTGTCCCGCTCTAACCCCACGCCGTGGTCGGAGGACGCCATGGAGGAGGCTCTGGAGGCGGTCAGAATTGGTCAAATGTCGATAAATCAAGCAGCCATTCACTATAATTTGCCATACTCGTCGTTATATGGTCGATTCAAGAGATGCAAATTTCAACCTGTTCAGaatCAGCCACCAATCACGACAGACGCTGAGCCCCGTGACGCCTCTGACCCTGTTGACCCCAGCGACCCCCTTGACCCCTACCCTCAGTATGGCGTCATGAACCCTCACGAGCAAACTCAGGTCACCAATGTGTACCCACACGCGCATGTCTCATATGAAACTTACCCATACTCAATGTATTACACGCAGTGTGACGTCACTAGCTGA
- Protein Sequence
- MTGTETFRVKCEPLSDEEEISSQFTKSYFNKMSPDSVLSQMIVGPKYGDDSEKDTITVTLLEEILLVECDLWYGAVVMHFASFMGNHILLMHDNALPHTAAIVSEYLSEVGIQVLGWPTHSPDLNSIEHVIKWHGLEELAPAPAGPAATPVRDQLCAPRHAALATLEPAADRHAGTSLISRHMETMNEVADSSEFVPLMIKDEPKQPHLSSDDTDSNGPTQETFSRSSPKSWTQLDMEKALEALRKHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLKGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALLAIRAGHASVQRAARLYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMEEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKFQPVQNQPPITTDAEPRDASDPVDPSDPLDPYPQYGVMNPHEQTQVTNVYPHAHVSYETYPYSMYYTQCDVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -