Basic Information

Insect: Heliconius cydno
Gene Symbol: ush
Assembly: GCA_036379175.1
Location: FAPN01004935.1:4051-10712[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.005 0.64 11.6 0.2 1 20 99 118 99 120 0.94

2 9 0.00045 0.057 14.9 1.2 1 23 157 179 157 179 0.97

3 9 0.16 21 6.8 1.0 3 20 210 227 209 229 0.92

4 9 1.4 1.7e+02 4.0 2.7 2 21 469 488 468 489 0.90

5 9 0.017 2.1 10.0 0.0 3 21 518 536 516 537 0.90

6 9 1.3 1.7e+02 4.0 0.1 2 23 565 586 564 586 0.94

7 9 0.0072 0.93 11.1 1.3 1 23 592 614 592 614 0.99

8 9 0.27 35 6.1 0.7 1 23 651 674 651 674 0.96

9 9 1 1.3e+02 4.3 0.7 3 20 707 724 706 726 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.005	0.64	11.6	0.2	1	20	99	118	99	120	0.94
2	9	0.00045	0.057	14.9	1.2	1	23	157	179	157	179	0.97
3	9	0.16	21	6.8	1.0	3	20	210	227	209	229	0.92
4	9	1.4	1.7e+02	4.0	2.7	2	21	469	488	468	489	0.90
5	9	0.017	2.1	10.0	0.0	3	21	518	536	516	537	0.90
6	9	1.3	1.7e+02	4.0	0.1	2	23	565	586	564	586	0.94
7	9	0.0072	0.93	11.1	1.3	1	23	592	614	592	614	0.99
8	9	0.27	35	6.1	0.7	1	23	651	674	651	674	0.96
9	9	1	1.3e+02	4.3	0.7	3	20	707	724	706	726	0.93

Sequence Information

Coding Sequence: ATGCCTGGAGAACCTCGCACGCCAAGCTCTGGCGGAGAGCGACCAGCCTCTAGCGGAGGCGCCTCACCTGCTTCAGAAGGCTCTGTTGCTGCTTCTCCACCACGCCTACGGCTCAATGCCAGTCTAGCCACTGATCCGGCGCTTGCACCACAAGCCACGTCTTTAAAACATGAACCTCCGTCGCCATCGCCGCCTCCGCCTCCTACACAGCCGCGAGATTATGGCTTAGCGCTGACAGCGGCTAATTTCTCTGCGCTATTTCCAGCAGCTGCAGTAGCAACTACTCCACCTGGTTATATGTGTAAACCATGCGGTATACGTTATTCCTCGTTGAGTACTCTTCAAGCACATCAAGAACACTATTGTTCAAAACGTAGAACAAAACCTGATGGGACAGAAGCAACAACGGACGTAGCGGCTGATGATTCTAGTGGAGACTCTAAAACTCCCCGACCACCCGGCAAACAATTCGCTTGTACTTATTGTTCATACAGTGCTGACAAAAAACTTAGTTTAAATCGACATATGCGAATGCATTCTTCTTCACCAGTCAGCAGCGGAACTCCCGTACCGCCACCTACTTCAAATGGTGAAAGTATAGAAGGGCAACCTGCCCAAGAACGTTATTGTATGGATTGTGATATTCATTTTACGTCAGTTAAAACATATCGCGCTCATAAAGCTCATTACTGTAATACAAGACAAGTAGTCAAACAAGTTTTAGCTGCCGCTAGGACAGGATCTGCCACGTCAGGATCTGCACCACCTTCACCAGGAGCGACTCCTCCAGCCCAAAGTCAATATGCATTAGCACTACCAACAAATCCAATTCTAATAGTTCCATATTCAATATTGCAAGGTGCAAGTAGACTTCCAGGCGCTACATTGCCCGATCCAGATACACCTTGCTTTTTGTTACCGAATGGAACTCTTCAACCTATTAGCCGAGCGTtgccaaatataaatacagaagTAAAAGAACCTGAAGTTTTAAAATCAGCCAATAGACCTCGTGAACCGTCGCGAGATGGTGCTACGCCTTTAGATCTGAGTGTTCGACGTACCCCCGAATCTGTAACAACAGATGAACATGAGAAAGAAAACAGAATGCGTTCAACCACTCCAGAGCAAATAGTTTGCGCTCCATCATTGCCAGGCTCCCCTGGAACACCGTCACCTTCAAGGAGATCTTCGTCGCCCAGTGGAGAAAGTTCTCCTAAGCGTCGCCGTCGTAATTCAAGAGGACCAACCCCAAAACCACCATGTATACCTTCTCCTCCTGAAGAAAAATTTACCCCAGTCGTACCTCCTCCAATCATGCCACCTGCTTTAGCCCTTCGATTAGCTTCAGAAATACCTGTAACGGCGGCAACCCCTCAAGTGTTAGTGAAGCAAGGAGTGTCAAAATGCATAGAATGCAATATAGTGTTCTGCAAATTCGAAAATTATCGCATTCACAAACGGCATTACTGTTCGGCCGGTGGAGGCGAGGAGAGGGCTAGTCCCGCCCCACCCGAGCCTGGACCGCCTCCACAGTATCGACAATTAATATGTTTGGCGTGTGGAATAAACTTTAGCTCAATAGACAATTTGACAACCCATCAATTATATTACTGCACGAAGCGGGAGACGCGTTCGCCACGTAGTCTACCGGAAGCGCCCCGGCCTTCGTCAGGGTCGGATGGCGGGTGGAAATGTCCATGTTGTGAAGTGGTGTCACCAACCGCAGCAGCCGCGCAGCGACACATGGAGTCTCATGCTGGAGTCAAGGCGTTTCGTTGCACGATCTGCCGGTACAGGGGAAACACGCTGAGAGGCATGCGGACGCACATACGCATGCATTTTCGTGAAAAACCTGCAGATCTACAGGAGGAGAGCTACATCTCATGCGTGCTCGAAGAAGACAACAGGGAGACTACATCACCTAGCCCAGCGGTTGGGGACCGGGTCCACAAATGTGGGTCTTGCGCGTACACTTCCACTTACCGTGGCAACGTTGTGCGACATGCGCGCCTTGTCCACGCCACTGAGGAACCTGAACCTGAAGAACAAACCTCGCCAATACCAGCGGTCGACATTAAGAAGGAACCAGAGACTGAAGAAGACACGCCTAACTTCTGCAAGTCGTGTAACATACCGTTTAAATACGTGAACACGTATAAAGCACACAAGCAGTTCTACTGCACCGCGAACCAAGACGCCGCCGCTAATAACAACGTACCAGCCAGAGTCAACGACGCTCCTGTCGTATGA
Protein Sequence: MPGEPRTPSSGGERPASSGGASPASEGSVAASPPRLRLNASLATDPALAPQATSLKHEPPSPSPPPPPTQPRDYGLALTAANFSALFPAAAVATTPPGYMCKPCGIRYSSLSTLQAHQEHYCSKRRTKPDGTEATTDVAADDSSGDSKTPRPPGKQFACTYCSYSADKKLSLNRHMRMHSSSPVSSGTPVPPPTSNGESIEGQPAQERYCMDCDIHFTSVKTYRAHKAHYCNTRQVVKQVLAAARTGSATSGSAPPSPGATPPAQSQYALALPTNPILIVPYSILQGASRLPGATLPDPDTPCFLLPNGTLQPISRALPNINTEVKEPEVLKSANRPREPSRDGATPLDLSVRRTPESVTTDEHEKENRMRSTTPEQIVCAPSLPGSPGTPSPSRRSSSPSGESSPKRRRRNSRGPTPKPPCIPSPPEEKFTPVVPPPIMPPALALRLASEIPVTAATPQVLVKQGVSKCIECNIVFCKFENYRIHKRHYCSAGGGEERASPAPPEPGPPPQYRQLICLACGINFSSIDNLTTHQLYYCTKRETRSPRSLPEAPRPSSGSDGGWKCPCCEVVSPTAAAAQRHMESHAGVKAFRCTICRYRGNTLRGMRTHIRMHFREKPADLQEESYISCVLEEDNRETTSPSPAVGDRVHKCGSCAYTSTYRGNVVRHARLVHATEEPEPEEQTSPIPAVDIKKEPETEEDTPNFCKSCNIPFKYVNTYKAHKQFYCTANQDAAANNNVPARVNDAPVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00214014;
80% Identity: -