Basic Information

Insect: Heliconius cydno
Gene Symbol: -
Assembly: GCA_036379175.1
Location: FAPN01047847.1:31-2825[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.18 23 6.7 0.6 1 20 31 50 31 52 0.94

2 10 0.046 6 8.6 0.2 2 23 81 103 80 103 0.95

3 10 0.0001 0.013 16.9 0.2 1 23 126 148 126 148 0.98

4 10 0.00011 0.014 16.8 0.2 1 23 152 175 152 175 0.96

5 10 0.0071 0.92 11.1 0.8 1 14 180 193 180 194 0.91

6 10 0.0036 0.46 12.1 1.1 2 23 210 232 209 232 0.91

7 10 0.00051 0.065 14.7 1.9 1 23 239 262 239 262 0.98

8 10 0.019 2.4 9.8 2.9 2 23 269 290 268 290 0.97

9 10 2.5e-06 0.00032 22.0 3.8 1 23 296 318 296 318 0.99

10 10 3.6e-05 0.0047 18.3 1.4 1 23 324 346 324 347 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.18	23	6.7	0.6	1	20	31	50	31	52	0.94
2	10	0.046	6	8.6	0.2	2	23	81	103	80	103	0.95
3	10	0.0001	0.013	16.9	0.2	1	23	126	148	126	148	0.98
4	10	0.00011	0.014	16.8	0.2	1	23	152	175	152	175	0.96
5	10	0.0071	0.92	11.1	0.8	1	14	180	193	180	194	0.91
6	10	0.0036	0.46	12.1	1.1	2	23	210	232	209	232	0.91
7	10	0.00051	0.065	14.7	1.9	1	23	239	262	239	262	0.98
8	10	0.019	2.4	9.8	2.9	2	23	269	290	268	290	0.97
9	10	2.5e-06	0.00032	22.0	3.8	1	23	296	318	296	318	0.99
10	10	3.6e-05	0.0047	18.3	1.4	1	23	324	346	324	347	0.95

Sequence Information

Coding Sequence: ATGACGGAGAAGCTAGCCCACATAGCCAATGTATCAACTATTCTGGAACATTCTAATCTAACCGCCTTCAAGACTAGACGACGATCTGGTTTTCCCTGTTTTTACTGCAGACGCATATATGAAAACTTCGAAGTTTTAAAAGATCATCAGTATAATGATAAATGTAaggctaatttaaaaaaaatgttggcCAAGTGTGTAATGGACCGACTAGTTGTATATGTTCatataacagaaataaaatgtactataTGTGATCAAATTCAAGCCAATTTAAACGAGTTGAAGTCACATTTGATAAAaacccataaaaaaaaactccacCCTGAATATGGAGACAGAATTATACCCTTCAAGCTGACGAAGACGAACGAATATGAGTGTCAAACGTGTGGTTTTAATTTCGAAACTTTTGGTGCAATCGAGCGTCATATGAACGTTCATTATAGGAATTTCGTTTGTGATCAGTGCGGTGCCGGTTACGTGACCCAAAGTCGATTAAAGGTGCATTTAAAATACTCCCACATACAGGGTGTGTTCCCTTGTGATATATGTAACAAAGTGTTCAATACTCAATACAAACACAAGTGTCATGTCGATGCAGTGCATAAAatggtgaaaaaaaataagtgccCAAAGTGTCCCGAACGGTTTACGGATTACTTTGACCGTCATCAACATATGGTGGAGGCGCATGGAGAACAGCCACTAAGGTACCGCTGCAATGTTTGCATGTCCGTCTTCAAACGGCGTTACGCCCTATCTCTACACATGAAACGACGTCATCTGGAAGTTAAGGAGAAAGAGTGTGATTTGTGTACATACAAGTGTCATACTATAGCCGAGTTGAAGGCTCATATGATCAAACATAATGGTGAAAGAATGTATGAGTGTTGTGTGTGTAAGAAATCGTATGCTAGgaagaaaactttaaaagaaCACATGCGTATACATAATAATGATCGTAGGTTTGTCTGTGTGGTATGCGGTCAGGCATTTGTACAGAATTGTAGCCTAAAAGGTCACATGAAAGCTCATCATGCGGACTATAGTATAGGGATAGGGAGGAGTTAG
Protein Sequence: MTEKLAHIANVSTILEHSNLTAFKTRRRSGFPCFYCRRIYENFEVLKDHQYNDKCKANLKKMLAKCVMDRLVVYVHITEIKCTICDQIQANLNELKSHLIKTHKKKLHPEYGDRIIPFKLTKTNEYECQTCGFNFETFGAIERHMNVHYRNFVCDQCGAGYVTQSRLKVHLKYSHIQGVFPCDICNKVFNTQYKHKCHVDAVHKMVKKNKCPKCPERFTDYFDRHQHMVEAHGEQPLRYRCNVCMSVFKRRYALSLHMKRRHLEVKEKECDLCTYKCHTIAELKAHMIKHNGERMYECCVCKKSYARKKTLKEHMRIHNNDRRFVCVVCGQAFVQNCSLKGHMKAHHADYSIGIGRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00778971;
90% Identity: iTF_00778971;
80% Identity: -