Hcyd036694.1
Basic Information
- Insect
- Heliconius cydno
- Gene Symbol
- -
- Assembly
- GCA_036379175.1
- Location
- FAPN01002256.1:1525-4480[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 3.2 4.1e+02 2.8 0.1 2 23 30 52 29 52 0.91 2 22 0.0023 0.3 12.6 0.4 3 23 78 98 76 98 0.96 3 22 0.00051 0.066 14.7 0.7 1 21 102 122 102 123 0.96 4 22 1.3 1.7e+02 4.0 0.4 1 23 164 187 164 187 0.95 5 22 5.3 6.8e+02 2.1 1.0 2 23 213 235 212 235 0.92 6 22 0.0035 0.45 12.1 0.8 2 23 259 280 258 280 0.95 7 22 0.00023 0.03 15.8 0.0 1 23 284 307 284 307 0.97 8 22 0.049 6.3 8.5 0.5 1 23 311 334 311 334 0.97 9 22 3.2 4.1e+02 2.8 0.3 1 23 339 364 339 364 0.89 10 22 0.00043 0.056 14.9 1.8 1 23 373 396 373 396 0.97 11 22 1.3 1.7e+02 4.0 0.4 3 23 465 486 464 486 0.96 12 22 0.5 64 5.3 0.4 1 23 509 532 509 532 0.94 13 22 0.00054 0.07 14.6 0.8 2 23 556 577 555 577 0.96 14 22 0.024 3 9.5 0.5 1 21 581 601 581 602 0.94 15 22 0.24 31 6.3 0.1 1 23 643 666 643 666 0.95 16 22 0.49 63 5.3 0.9 2 23 692 714 691 714 0.95 17 22 0.0059 0.75 11.4 0.3 2 23 738 759 737 759 0.94 18 22 0.0001 0.013 16.9 0.0 1 23 763 786 763 786 0.97 19 22 0.54 70 5.2 0.9 1 23 790 813 790 813 0.97 20 22 2.3 2.9e+02 3.2 0.3 1 23 818 843 818 843 0.90 21 22 0.13 16 7.2 5.4 1 22 852 873 852 875 0.88 22 22 0.0015 0.19 13.2 1.6 1 23 885 908 885 908 0.96
Sequence Information
- Coding Sequence
- ATGAAAACGGAACATGTAAATagtgattttaaaaatgtgttcTATAGAACTAaagataatttagttaaagttGATATAACTAATCTTAAATGTAACATTTGTAGTCAGGATATACAAGATATAGATACTTTAATGGGCCATCTATCTAGAGAGCACAACAAATCAGTTAAATTTAACGCGCGTTTTGGTGTATTACCATACAAACAAAATGCAAATGACGATCAATGGATATGCgtgtattgtaaaaaaacttatgtagaatttattcaatttaaacgaCATATAGCGAcacattttatgaattttagcTGTGACAAGTGTGGTACAACTTTCATATCTGATCATGCCTTGCGAGATCATCGTCGGCAGGTTAAATGTTTTAGGACTGCATACAAGCCTCGAAATGGCAGAGTCATGAAACCTCGTACAAACGCAGAAATTATTCTTCAATGTTCGACTGCCTGTCCATTTAGGACATGGAAAAGcaattttaattgtgttttcTGTAGAGTACAATCAAGCGATCCAAGTATACTTCGAACTCATATGGTGACTCGCCACGAAAATTATGATGTACAAGcagctttttataaaaaattaggtAAAGAATTTCTTAACATTGACATAACTGACCTTCACTGTAAACTGTGTTTTATTcctattgaaaattttgaaactttAACATATCACTTAAAGAATGATCATCAACAGCCAATAAACTCAGATGCCCAAGTGGGTGTTTTGCCTTTTCGGTTAAACAATGGCTCGATTTGGAAATGCACAATGTGCCCTAATGagtttaaagattttgtatcattaaaaaaacacacatcCGAACACTTTCAGAATTACGTATGTGATACTTGTGGCGAAGGTTTCATTACTGAATCGGCCATGATAGCACATACTAAAATAccacatgaaaataaatataattgtagtcGATGTGTGGCAACTTTTTCCAGTTTGGAGGAGAGAAATATTCATGTTAAAACACAACATACCTCGACCCCGTATATGTGTGTTTACTGTAAAGATAAGCCTCGTTTTGCTAATTGGGAGCTTCGGAAGAAACATTTAATGGAAGTTCATAATTATAAGACTGGTGCTGATAAATATGAATGTGCTACTTGTCAGAAATCTTTTAAAACTCGATCAGGAAAATACAATCATATGGCAAGAACTCATAGAGTAAAAAAAGATACTGAATTAAACTACCCGTGCCATAGCTggaCCACAAGGGATATTGACGGGcacaaagaaaaagaaagtaaaccTAAAAAAGGTTTATTTGAACGGTCCGTTAAGCAGAATCCCCAACGGCGAAATGCTGTGTTAATACTTAAACACTCATCTGCTATTCCATTTAAAACTAGATTTAATAGAATACTTTGCTCTTACTGCCACGATGAATTTGAACCAATGGAGGCTTTACGAGATCACGTCAAGATAAAACATGTTAACGCTGATTACAATAGCGCCTTTTATAAAGTCGTGGATGATTTAAAAGTAGATATtagtcattttaaatgtaacatatgttcggaaaatattcaaagtgTTGAAATGTTTATGACACACTTGTCTCGTGACCAtggaaaaatagttaatttcgaCGTGCCCTTTGGCGTTTTACCATACAAGCAAAATGAGACTGGCGTGTGGATGTGCCTAGATTGTGACAAAGTATTTTCTgaattttcacatattaatGGACATTTACGTAGTCATGCGAAAATTTTCACCTGCGATAAGTGCGGAGCAACATTTCTATCTGAACATGGGCTTAAGCAACACGAGCGTAACTTTAAATGTTACAAGGCTACATATAAACCACGTTTTGGAAAAGCCCTTAAACATCGTTTTAACactgaaataattttacaatgttcAACTGCATGCCCTTTTCGTACTTGGGGGCAAAATTTCAATTGTGTTTTCTGTCGTGTCCAGTCCAATGATCCAAACGGTTTGCGTGCTCATATGGCGTCACGGCACGCAAATTTTGATGTTCAACTGGTGTTTAGTAGGAAATTACGTAAAGAGTTTCTTAAAGTAGACATAACCGACTTACAGTGTAAGCTctgttttttacatatagaCACTCTTGACGATCTTTtgacacatttaaaaaacgaTCACAAACAACCTGTCAATGTGGACGTCCAACCAGGAGTACTCCCGTTTAAGCTGAATGACGGTTCCAGTTGGAGATGTGCGATAtgcaaaatacaattttcagattttataTCCCTGAAAAAGCATACAGCGGAACATTTTCAAAACTATGTCTGTGACACTTGTGGTGAGGGTTTTATAACAGAAGTTGCTCTTAGAGCACATACGAAAATTCCACAtgacaacaaatataattgcaGTAGATGTATAGCAACGTTTTCTACcttagaagaaaaaaacacCCATGTCAAAACACAGCACACTACCCTTCCGTATATGTGTGTTTATTGTAAAGACAAACCCAGATTTGCCACTTGGGAGTTAAGAAAACGGCACTTAATGGAAATTCATAATTACAGACCTGGTGCTGAAATGTACGAGTGCACAACATGTCACATGATGTTCAAGACTCGGTCTCAAAAGTATCACCATAATGTAAAAGTACATCGcgcaaaaaaagaaatggatTTCGGTTTTTCTTGTGGTCACTGTTCCAGAGGTTTTGCTACAAAACTATCTTTGGATAAGCATAtagctaaaaaacattttcacgtTTGA
- Protein Sequence
- MKTEHVNSDFKNVFYRTKDNLVKVDITNLKCNICSQDIQDIDTLMGHLSREHNKSVKFNARFGVLPYKQNANDDQWICVYCKKTYVEFIQFKRHIATHFMNFSCDKCGTTFISDHALRDHRRQVKCFRTAYKPRNGRVMKPRTNAEIILQCSTACPFRTWKSNFNCVFCRVQSSDPSILRTHMVTRHENYDVQAAFYKKLGKEFLNIDITDLHCKLCFIPIENFETLTYHLKNDHQQPINSDAQVGVLPFRLNNGSIWKCTMCPNEFKDFVSLKKHTSEHFQNYVCDTCGEGFITESAMIAHTKIPHENKYNCSRCVATFSSLEERNIHVKTQHTSTPYMCVYCKDKPRFANWELRKKHLMEVHNYKTGADKYECATCQKSFKTRSGKYNHMARTHRVKKDTELNYPCHSWTTRDIDGHKEKESKPKKGLFERSVKQNPQRRNAVLILKHSSAIPFKTRFNRILCSYCHDEFEPMEALRDHVKIKHVNADYNSAFYKVVDDLKVDISHFKCNICSENIQSVEMFMTHLSRDHGKIVNFDVPFGVLPYKQNETGVWMCLDCDKVFSEFSHINGHLRSHAKIFTCDKCGATFLSEHGLKQHERNFKCYKATYKPRFGKALKHRFNTEIILQCSTACPFRTWGQNFNCVFCRVQSNDPNGLRAHMASRHANFDVQLVFSRKLRKEFLKVDITDLQCKLCFLHIDTLDDLLTHLKNDHKQPVNVDVQPGVLPFKLNDGSSWRCAICKIQFSDFISLKKHTAEHFQNYVCDTCGEGFITEVALRAHTKIPHDNKYNCSRCIATFSTLEEKNTHVKTQHTTLPYMCVYCKDKPRFATWELRKRHLMEIHNYRPGAEMYECTTCHMMFKTRSQKYHHNVKVHRAKKEMDFGFSCGHCSRGFATKLSLDKHIAKKHFHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00028037;
- 90% Identity
- iTF_00213834;
- 80% Identity
- -