Basic Information

Insect: Heliconius cydno
Gene Symbol: -
Assembly: GCA_036379175.1
Location: FAPN01033954.1:4009-14499[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00027 0.035 15.6 3.4 1 23 238 260 238 260 0.98

2 10 0.00026 0.033 15.7 6.5 1 23 266 288 266 288 0.96

3 10 0.0017 0.22 13.1 6.9 1 23 294 316 294 316 0.98

4 10 0.00072 0.093 14.2 1.0 1 23 322 344 322 344 0.97

5 10 6.5e-06 0.00084 20.7 1.0 1 23 350 372 350 372 0.97

6 10 4.7e-06 0.00061 21.1 0.0 1 23 378 400 378 400 0.98

7 10 5.7e-05 0.0073 17.7 0.4 1 23 405 427 405 427 0.96

8 10 1.2e-05 0.0016 19.8 0.5 1 23 540 562 540 562 0.98

9 10 0.0018 0.23 13.0 3.2 1 23 628 650 628 650 0.96

10 10 3e-05 0.0038 18.6 4.3 1 23 660 682 660 682 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00027	0.035	15.6	3.4	1	23	238	260	238	260	0.98
2	10	0.00026	0.033	15.7	6.5	1	23	266	288	266	288	0.96
3	10	0.0017	0.22	13.1	6.9	1	23	294	316	294	316	0.98
4	10	0.00072	0.093	14.2	1.0	1	23	322	344	322	344	0.97
5	10	6.5e-06	0.00084	20.7	1.0	1	23	350	372	350	372	0.97
6	10	4.7e-06	0.00061	21.1	0.0	1	23	378	400	378	400	0.98
7	10	5.7e-05	0.0073	17.7	0.4	1	23	405	427	405	427	0.96
8	10	1.2e-05	0.0016	19.8	0.5	1	23	540	562	540	562	0.98
9	10	0.0018	0.23	13.0	3.2	1	23	628	650	628	650	0.96
10	10	3e-05	0.0038	18.6	4.3	1	23	660	682	660	682	0.97

Sequence Information

Coding Sequence: ATGTGTATGCCAACAAGCAATGTTTCGGGATTTGGGTACTCTTGGGGGTTTACGAGCACCGCGGACCTTACAAAATGTGAAGTGGATCCTCCTAGTAGTTTAAGTTATACTTTAGGCAATACAGTGTCGCCAGAAACAACACTGACTGTTATGTCCAATAAGACACCACAAGTTCAAGAGAAAGTGGGAACAGTTGTGGCAGTGACAAATGCAGCGACGCAAGTAACAAGGGTTGTGACTACTGGTACTCCAGTGGCTGGTAGAAGAGCCatgtttgtattaaatgaTCCCACTCATACTATAAACAGAGTGTCACAACAAAATCAAACTGCAACTATACAGAGTGAGTCTGCAAATCTAGCATCTAAGCCATTCATGACTCCAATAGGACCAATACAACTTACAGCTGAGGAATGTAATGAGATATTAATGAAACGAGCCCTCCAAGCTCAGGGCATAGCCACACCAGTAATAGATGCATCACAATTAAatcattcaatattaaatggtACAATAAAGACATTAACTGAGGCGACCTCGCAACAATCACAAACAGAAACTATTCCAACAACAACAGTTCACCAACACCATTTATTACATGCTAAACAGGAGCCCGGCACAGCTAATAATTCACCTAAAacAGTATATTCACAAACTGAACTTATGAGCAATGCAGTGATGACAGTTGCTCCCCCAGTCAAAGAGAGACCGTACTCATGCGACGAGTGTGGCAAATCATTTCTACTAAAACATCATTTGACAACACATGCTAGAGTACATACAGGTGAAAGGCCCCACGTCTGCGCGCACTGCGGCAAGGCGTTCGCACGGAAACACTGTCTCAATACGCATCTGCTATTGCATTCGGCGGCGCGCCCATACAGGTGTCATGAGTGTAAAATGGCATTCACGTTGAAACATCATCTAGTTACACATTCTAGAGTCCACAGTAGAGATCGTCCGTTCGTCTGCGGCGAGTGCGGGCGCGGGTTTCCTCTGAAGAGACACCTGGTGACGCACAGCAAGTACCACGCCGGGGAACGGCCTTACGTCTGCACTGACTGTGGTGAAAGTTTTGCTCAAAAGGAGCACCTAGTAATGCACAGTCGGTTCCATGGTTCGTTATCCCCGTTTGTGTGCCCTGACTGTGGTGTAGCCTTCGCTCGCAAGTTCCAGCTTGTCAACCACGGACGAGTGCACGGGCGAGTACCACACGCCTGTCCAGTGTGTGGCAAGGAGTTCTTACAAAAACGGACCCTTGTTGCTCATATGAAaaTTCACACAGGAGAAGGCGCGGTAGCATGTATAGAATGTGGAGAcgcttttaaatgtaaatctgATTTACAACAACACTGTAAAATGACAAGACACTGCTTAGCATCAATACAAACACAACAACAAACGCAACAGCAACAACAAGCGCAGCAACAGCAGCAACAAGCACAGCAGCAGGCCCAACAACAAGCTCAGCAGCAACAACAGGCACAGCAGCAACAGCAACAACAACAGCAGCAGCAACAGCAAACAACAGTTATAAAACAAGACGACTTTAAGCCACAAATTGTTCAAgtaATTGGTGCAGACGGTCAAATAATAACAGAGAAAAGTACACCTGGTTATGTATGTCCAGAGTGTGGGTCGTGTTTCAATACAAAGGAGGCGCTGTCGCTGCATGTGCGGCTGCACGCGGGTGACCGCACGTGCGTGACGGACCTGTGCGCGCTGACGGCCGCGCTGCAGCCCGGCCTTGTGGCCGCCGCGCAGCACCACGCCGCGCAGCACAATCAACCGATACAAATCATCTCGTCTAATCCCAACAATGTAGTTCACACACAAGTAATAGCAACGAATTCTCACCATATAACGCCTCGACCTAAGCTGCATTTCTGCGTGGAGTGCGGGAAAGGTTTCGCAGCGAAACATGGACTTTTAGCGCATCATAgaaggCATCCTGACGGTAGTTGTACTTTAAGAACGCATGTGTGTGATCAGTGTGGCAAGGCGTTCTTCCAGAAGAACCATCTGATGCTTCATCAAAGACAGCATATGGATTTGCCGTCTAGAAATTCGCAAACACAAGTACAACAACAAGTAACACAACAAGCGCAGCAACAAGCTGCTCAGCAAGCAGCACAACAAGTCGCCCAACAAGTTCAGCAACAGGTGCAGCAGCAGCAGCAACAACAACAGCAGCAACAACATCAGCAGCAAGTGCAACATCAAAATTTAGAACTGGAACAGGATCATCAACCCACGCATATACAAGTTGTAACAAACAGATCAGGCCAAGTGATCGGCAATCAAATAGTAGTGGGAGTGGGCGGCCGCCGAACGCTCCTCGGGTCGCCCCTGCACATCGTCACACGGGATAAACCCTTACAAACGCAAATAGGACATAAGAGACACGCTGGCGACGTCAAAGAAGTGGGCGGGCTTGTGCTATCAACAGGGCGAGGGACGGGGCTCATCAAATACGAAATATCGATACCGCCGCCCACATCTGTAGTGCAAGTACAGCAGCTCGACTAA
Protein Sequence: MCMPTSNVSGFGYSWGFTSTADLTKCEVDPPSSLSYTLGNTVSPETTLTVMSNKTPQVQEKVGTVVAVTNAATQVTRVVTTGTPVAGRRAMFVLNDPTHTINRVSQQNQTATIQSESANLASKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHSILNGTIKTLTEATSQQSQTETIPTTTVHQHHLLHAKQEPGTANNSPKTVYSQTELMSNAVMTVAPPVKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCAHCGKAFARKHCLNTHLLLHSAARPYRCHECKMAFTLKHHLVTHSRVHSRDRPFVCGECGRGFPLKRHLVTHSKYHAGERPYVCTDCGESFAQKEHLVMHSRFHGSLSPFVCPDCGVAFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHMKIHTGEGAVACIECGDAFKCKSDLQQHCKMTRHCLASIQTQQQTQQQQQAQQQQQQAQQQAQQQAQQQQQAQQQQQQQQQQQQQTTVIKQDDFKPQIVQVIGADGQIITEKSTPGYVCPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAAQHHAAQHNQPIQIISSNPNNVVHTQVIATNSHHITPRPKLHFCVECGKGFAAKHGLLAHHRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPSRNSQTQVQQQVTQQAQQQAAQQAAQQVAQQVQQQVQQQQQQQQQQQHQQQVQHQNLELEQDHQPTHIQVVTNRSGQVIGNQIVVGVGGRRTLLGSPLHIVTRDKPLQTQIGHKRHAGDVKEVGGLVLSTGRGTGLIKYEISIPPPTSVVQVQQLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00642573;
90% Identity: iTF_01182080;
80% Identity: -