Basic Information

Insect: Heliconius cydno
Gene Symbol: -
Assembly: GCA_036379175.1
Location: FAPN01011130.1:130-2013[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.012 1.5 10.4 1.3 1 23 52 74 52 74 0.96

2 16 0.21 27 6.5 0.1 2 23 103 125 102 125 0.89

3 16 0.013 1.7 10.3 0.3 2 23 146 168 145 168 0.94

4 16 0.00026 0.033 15.7 2.2 2 23 174 196 173 196 0.95

5 16 0.00092 0.12 13.9 1.0 1 23 201 224 201 224 0.95

6 16 0.18 23 6.7 0.3 2 23 227 249 226 249 0.95

7 16 0.0034 0.44 12.1 1.8 2 22 256 276 255 276 0.95

8 16 0.0019 0.25 12.9 0.5 1 23 334 357 334 357 0.93

9 16 0.3 38 6.0 0.1 3 23 386 407 384 407 0.92

10 16 0.056 7.2 8.3 0.3 3 23 431 453 429 453 0.94

11 16 0.00034 0.044 15.3 0.6 3 20 460 477 458 481 0.90

12 16 0.0054 0.69 11.5 0.4 1 23 486 509 486 509 0.97

13 16 0.00023 0.029 15.8 0.2 2 23 515 537 515 537 0.94

14 16 2.5e-05 0.0032 18.8 4.7 1 23 541 564 541 564 0.97

15 16 0.00011 0.014 16.8 0.6 2 23 571 592 570 592 0.96

16 16 0.00073 0.094 14.2 2.1 1 23 598 620 598 620 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.012	1.5	10.4	1.3	1	23	52	74	52	74	0.96
2	16	0.21	27	6.5	0.1	2	23	103	125	102	125	0.89
3	16	0.013	1.7	10.3	0.3	2	23	146	168	145	168	0.94
4	16	0.00026	0.033	15.7	2.2	2	23	174	196	173	196	0.95
5	16	0.00092	0.12	13.9	1.0	1	23	201	224	201	224	0.95
6	16	0.18	23	6.7	0.3	2	23	227	249	226	249	0.95
7	16	0.0034	0.44	12.1	1.8	2	22	256	276	255	276	0.95
8	16	0.0019	0.25	12.9	0.5	1	23	334	357	334	357	0.93
9	16	0.3	38	6.0	0.1	3	23	386	407	384	407	0.92
10	16	0.056	7.2	8.3	0.3	3	23	431	453	429	453	0.94
11	16	0.00034	0.044	15.3	0.6	3	20	460	477	458	481	0.90
12	16	0.0054	0.69	11.5	0.4	1	23	486	509	486	509	0.97
13	16	0.00023	0.029	15.8	0.2	2	23	515	537	515	537	0.94
14	16	2.5e-05	0.0032	18.8	4.7	1	23	541	564	541	564	0.97
15	16	0.00011	0.014	16.8	0.6	2	23	571	592	570	592	0.96
16	16	0.00073	0.094	14.2	2.1	1	23	598	620	598	620	0.97

Sequence Information

Coding Sequence: atgGTAAAGGGTACATTTACAgttgagaattttttttcagatatagAACCTCGGAAACTAAAAGGCAGCGAATCATCATCGATGCGTAGAAGGAAAAACCTTCAATTGCTCTTCAACAATACGACGGTTATACCGTTTAAATGGAGAGGCAAATATCTTTGCTTCTATTGCAGTAAAGATATTTCAGTATATTCGGAACTTAGAAATCATACTAAGTCCCACGGTAATTGTTCTACCAAAGATCATTCGTTGAAAGTTCTCAAAGGTGGACAGaatatggaaattaaaatcgatataTCAAAGCTTAGCTGCGAAATTTGTAATGAAGAATTTACGATTTTCGATGAAATTGTGACTCATTTGCTTCTTAAGCATAAATTGGAGTTCGATAGAGAAGTGAAAATGGCTATAGAAGAGTATAGGCTGGTGGACTTAAGTTGTTTGCTTTGTGatgaaaaatttacatattttggcTATTTAGTGTcccatgtaaataataatcatccgAAAAATTGTTTAGTATGTGATAAATGTAaccaaaagtttaataaaaagcgCGATCTCTTctctcatattaaaaattatcacaGGGAGGGTGGTTATAGATGTGAGATTTGTCCACAAACCTTTAGTTCTCTTAATATACTGCGCAAACATAGAAGTAACAGACATCTTACTAGATGCGGCATTTGCCATTTACGGTTACCTTCTGCGgtattgaaacaaaaacacatGGAAATAGAACATCCTGATGATGGTTCACTCCAGTGTCAGATATGTTTCAAAGATTTTCACACAAAACAAGGCCTTAAAATGCATTTACGTAAATGCAAAGGCGACATTTTCAATATAGCAATTAAGAAAGAAGAGTGCCAAGTAATGGACCTCGATTGTGACTATGAAGGCGTTAAAAGACCAAGCGTCAAACAAATTCGTGAGAATATTGTCTCAGTTATAAATATGTCCACAGCGATACcgtttaatttctataaaaacaaatttaattgctTCTACTGTTCCAAGGATTTCCCAGATTCGGATTCTATGAGAGAACACACAATTTTAGAGCATCCTATATGTGATGTAAAGgaaaaatgtatcaaaaaaTGTCGAGAATCCGTCGCCTGtgttaaaatcgatatttcaTCACTAGcatgtaaaatttgttttgaatCAATGACTGATCTCGATACTCTTTTGGACCATCTCATATTAAAACACAGTGCGAATTATGATAAATCAATAACAACTTGTTTGCAACCGTACAAACTAATCAAAGATCACATGGCGTGTCCGAACTGCCCTACTGAAGTATTTCGTTTCTTTGgaacattattaaaacatatgaataataagcatactaataataatattatctgtgTATATTGCGGTCAGACGTTCCGAAGAGATCAAAACTTACGTGTCCATATATGGAGACATCATAGAGACGGcagatttaaatgtaatatatgtgGAGCAGAATGTAATATACCGTCGAGGTTGTATATGCACATGGCGAAAGCACATGGAGTCAAGGCGGCTAAGTGTCCTAAGTGTCCGGAAAGCTTCGCCACGCAGTATCTAAGACAGAAGCATTTGATCGAAGCACACGACTCAGGCCACAAATGCTCCTACTGTGGCAAACTTTTTACTAGAAACTCCTTTATGCGAGATCATATAAGACGAACGCATCTGAAGGAGAAGAATGTGGAATGTTCTATTTGTAATATGAAATTCTTTAATAACATTCTGTTAAGGAGACATATGGTTAAACACAGTGGCGAGAAGAATTTTCACTGTGACATCTGTGGTGAAAGATTTTATTGGCGGAAAAGTTTGCGTACGCATATGGCGCGGCATAGTAAACTTATCAATACTATATAG
Protein Sequence: MVKGTFTVENFFSDIEPRKLKGSESSSMRRRKNLQLLFNNTTVIPFKWRGKYLCFYCSKDISVYSELRNHTKSHGNCSTKDHSLKVLKGGQNMEIKIDISKLSCEICNEEFTIFDEIVTHLLLKHKLEFDREVKMAIEEYRLVDLSCLLCDEKFTYFGYLVSHVNNNHPKNCLVCDKCNQKFNKKRDLFSHIKNYHREGGYRCEICPQTFSSLNILRKHRSNRHLTRCGICHLRLPSAVLKQKHMEIEHPDDGSLQCQICFKDFHTKQGLKMHLRKCKGDIFNIAIKKEECQVMDLDCDYEGVKRPSVKQIRENIVSVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMREHTILEHPICDVKEKCIKKCRESVACVKIDISSLACKICFESMTDLDTLLDHLILKHSANYDKSITTCLQPYKLIKDHMACPNCPTEVFRFFGTLLKHMNNKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKAHGVKAAKCPKCPESFATQYLRQKHLIEAHDSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDICGERFYWRKSLRTHMARHSKLINTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00621427;
90% Identity: iTF_00897141;
80% Identity: -