Hcyd000500.1
Basic Information
- Insect
- Heliconius cydno
- Gene Symbol
- -
- Assembly
- GCA_036379175.1
- Location
- FAPN01123864.1:1-1038[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.6e-17 1.6e-13 51.1 0.0 2 42 37 78 36 81 0.94 2 2 2.8 8e+03 -2.3 0.0 30 41 81 93 80 94 0.73
Sequence Information
- Coding Sequence
- GGGGGCGTGGGCGACTCGCAGGGCCCGGGACAGGGCGTGGGGGGAGTGGGCGGCGTGGGGGGAAGCGCTATGCAGCAGAAACGCCGGCGCACGACCAACCCACAGGCGGAGGAGAACTTTCAGCGCGCGCTCGAGGCGGTGCGCTTCGGCGGCATTGGGTTCTGCAAGGCGGCGCGCATGTTCGGTGTGAACAATCGTACGCTCTGGCTGGAGTACAAGAAGAAGGGCTACCCCAACAACCGGCCGAGCATTAAGAGTCGTATCAAGCGCGAGCACGTGACGCCGCCACCTAAAGAGGAGGCGCCGGCGCAGGACGCACAACTGGCGCTGTTGTGCCCGCCGCACGCGGTGCCCGTACCGTTCCTGGACGCGCGCCCCGTCGAGTTCAACATAATCAACGGCGTGAACTTCCCGTTGCAATAG
- Protein Sequence
- GGVGDSQGPGQGVGGVGGVGGSAMQQKRRRTTNPQAEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHVTPPPKEEAPAQDAQLALLCPPHAVPVPFLDARPVEFNIINGVNFPLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -